Literature DB >> 14970727

Sequence analysis of a rainbow trout cDNA library and creation of a gene index.

C E Rexroad1, Y Lee, J W Keele, S Karamycheva, G Brown, B Koop, S A Gahr, Y Palti, J Quackenbush.   

Abstract

Expressed sequence tag (EST) projects have produced extremely valuable resources for identifying genes affecting phenotypes of interest. A large-scale EST sequencing project for rainbow trout was initiated to identify and functionally annotate as many unique transcripts as possible. Over 45,000 5' ESTs were obtained by sequencing clones from a single normalized library constructed using mRNA from six tissues. The production of this sequence data and creation of a rainbow trout Gene Index eliminating redundancy and providing annotation for these sequences will facilitate research in this species. Copyright 2003 S. Karger AG, Basel

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Year:  2003        PMID: 14970727     DOI: 10.1159/000075773

Source DB:  PubMed          Journal:  Cytogenet Genome Res        ISSN: 1424-8581            Impact factor:   1.636


  42 in total

1.  Phylogenetic analysis of the insulin-like growth factor binding protein (IGFBP) and IGFBP-related protein gene families.

Authors:  Buel D Rodgers; Eric H Roalson; Cullen Thompson
Journal:  Gen Comp Endocrinol       Date:  2007-04-27       Impact factor: 2.822

2.  Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors.

Authors:  Jeffrey A Yoder; Timothy M Orcutt; David Traver; Gary W Litman
Journal:  Gene       Date:  2007-07-27       Impact factor: 3.688

3.  Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome.

Authors:  Jong S Leong; Stuart G Jantzen; Kristian R von Schalburg; Glenn A Cooper; Amber M Messmer; Nancy Y Liao; Sarah Munro; Richard Moore; Robert A Holt; Steven J M Jones; William S Davidson; Ben F Koop
Journal:  BMC Genomics       Date:  2010-04-30       Impact factor: 3.969

4.  Linking the genomes of nonmodel teleosts through comparative genomics.

Authors:  E Sarropoulou; D Nousdili; A Magoulas; G Kotoulas
Journal:  Mar Biotechnol (NY)       Date:  2008-02-23       Impact factor: 3.619

5.  Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver.

Authors:  Catherine-Ines Kolditz; Gilles Paboeuf; Maïena Borthaire; Diane Esquerré; Magali SanCristobal; Florence Lefèvre; Françoise Médale
Journal:  BMC Genomics       Date:  2008-10-29       Impact factor: 3.969

6.  A first generation BAC-based physical map of the rainbow trout genome.

Authors:  Yniv Palti; Ming-Cheng Luo; Yuqin Hu; Carine Genet; Frank M You; Roger L Vallejo; Gary H Thorgaard; Paul A Wheeler; Caird E Rexroad
Journal:  BMC Genomics       Date:  2009-10-08       Impact factor: 3.969

7.  Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis.

Authors:  Antoine D Rolland; Jean-Jacques Lareyre; Anne-Sophie Goupil; Jérôme Montfort; Marie-Jo Ricordel; Diane Esquerré; Karine Hugot; Rémi Houlgatte; Fréderic Chalmel; Florence Le Gac
Journal:  BMC Genomics       Date:  2009-11-20       Impact factor: 3.969

8.  Estimates of linkage disequilibrium and effective population size in rainbow trout.

Authors:  Caird E Rexroad; Roger L Vallejo
Journal:  BMC Genet       Date:  2009-12-14       Impact factor: 2.797

9.  Comparative analysis of catfish BAC end sequences with the zebrafish genome.

Authors:  Hong Liu; Yanliang Jiang; Shaolin Wang; Parichart Ninwichian; Benjaporn Somridhivej; Peng Xu; Jason Abernathy; Huseyin Kucuktas; Zhanjiang Liu
Journal:  BMC Genomics       Date:  2009-12-10       Impact factor: 3.969

10.  Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library.

Authors:  Cecilia Castaño Sánchez; Timothy P L Smith; Ralph T Wiedmann; Roger L Vallejo; Mohamed Salem; Jianbo Yao; Caird E Rexroad
Journal:  BMC Genomics       Date:  2009-11-25       Impact factor: 3.969

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