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Literature DB >> 14870684

RNA fluorescence in situ hybridization tagging and recovery of associated proteins to analyze in vivo chromatin interactions.

Lyubomira Chakalova¹, David Carter, Peter Fraser.

Abstract

Mesh：

Substances：
Chromatin
RNA

Year: 2004 PMID： 14870684 DOI： 10.1016/s0076-6879(03)75029-0

Source DB: PubMed Journal: Methods Enzymol ISSN： 0076-6879 Impact factor: 1.600

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Cited

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15 in total

1. The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing.

Authors: Lisa Redrup; Miguel R Branco; Elizabeth R Perdeaux; Christel Krueger; Annabelle Lewis; Fátima Santos; Takashi Nagano; Bradley S Cobb; Peter Fraser; Wolf Reik
Journal: Development Date: 2009-01-14 Impact factor: 6.868

2. The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.

Authors: M A Bender; Tobias Ragoczy; Jongjoo Lee; Rachel Byron; Agnes Telling; Ann Dean; Mark Groudine
Journal: Blood Date: 2012-02-29 Impact factor: 22.113

3. Heritable, Allele-Specific Chromosomal Looping between Tandem Promoters Specifies Promoter Usage of SHC1.

Authors: Xichuan Li; Zhenzhen Lin; Hao Wang; Dan Zhao; Xing Xu; Yiliang Wei; Xiaoting Li; Xiaobo Li; Yougui Xiang; Lance S Terada; Zhe Liu
Journal: Mol Cell Biol Date: 2018-04-16 Impact factor: 4.272

4. AID is required for the chromosomal breaks in c-myc that lead to c-myc/IgH translocations.

Authors: Davide F Robbiani; Anne Bothmer; Elsa Callen; Bernardo Reina-San-Martin; Yair Dorsett; Simone Difilippantonio; Daniel J Bolland; Hua Tang Chen; Anne E Corcoran; André Nussenzweig; Michel C Nussenzweig
Journal: Cell Date: 2008-12-12 Impact factor: 41.582

5. Analysis of β-globin chromatin micro-environment using a novel 3C variant, 4Cv.

Authors: Ryan C Pink; Christopher H Eskiw; Daniel P Caley; David R F Carter
Journal: PLoS One Date: 2010-09-29 Impact factor: 3.240

6. Organization of the amplified type I interferon gene cluster and associated chromosome regions in the interphase nucleus of human osteosarcoma cells.

Authors: Michael J Zeitz; Narasimharao V Marella; Kishore S Malyavantham; Sandra Goetze; Juergen Bode; Ivan Raska; Ronald Berezney
Journal: Chromosome Res Date: 2009-03-13 Impact factor: 5.239

RNA fluorescence in situ hybridization tagging and recovery of associated proteins to analyze in vivo chromatin interactions.

1. The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing.

2. The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.

3. Heritable, Allele-Specific Chromosomal Looping between Tandem Promoters Specifies Promoter Usage of SHC1.

4. AID is required for the chromosomal breaks in c-myc that lead to c-myc/IgH translocations.

5. Analysis of β-globin chromatin micro-environment using a novel 3C variant, 4Cv.

6. Organization of the amplified type I interferon gene cluster and associated chromosome regions in the interphase nucleus of human osteosarcoma cells.

7. Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region.

8. Transcription of productive and nonproductive VDJ-recombined alleles after IgH allelic exclusion.

9. Antisense intergenic transcription precedes Igh D-to-J recombination and is controlled by the intronic enhancer Emu.

Review 10. Silencing by imprinted noncoding RNAs: is transcription the answer?