Literature DB >> 1476999

SQUID: a program for the analysis and display of data from crystallography and molecular dynamics.

T J Oldfield1.   

Abstract

SQUID is a flexible computer program that allows the analysis and display of molecular coordinates from crystallography, NMR, and molecular dynamics. The program can also display two-dimensional and three-dimensional data using many graph types, as well as perform array processing of data with numerous intrinsic functions. Graphics are based on the use of "move" and "draw" instructions, allowing easy development of new device drivers, including vector plotters.

Mesh：

Year:  1992        PMID： 1476999     DOI： 10.1016/0263-7855(92)80077-q

Source DB:  PubMed          Journal:  J Mol Graph        ISSN： 0263-7855


  8 in total

1.  ProRegIn: a regularity index for the selection of native-like tertiary structures of proteins.

Authors:  Lipi Thukral; Sandhya R Shenoy; Kumkum Bhushan; B Jayaram
Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

2.  The quality and validation of structures from structural genomics.

Authors:  Marcin J Domagalski; Heping Zheng; Matthew D Zimmerman; Zbigniew Dauter; Alexander Wlodawer; Wladek Minor
Journal:  Methods Mol Biol       Date:  2014

3.  Using experimental information to produce a model of the transmembrane domain of the ion channel phospholamban.

Authors:  P Herzyk; R E Hubbard
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

4.  Automated method for modeling seven-helix transmembrane receptors from experimental data.

Authors:  P Herzyk; R E Hubbard
Journal:  Biophys J       Date:  1995-12       Impact factor: 4.033

5.  Characterising the geometric diversity of functional groups in chemical databases.

Authors:  S M Boyd; M Beverley; L Norskov; R E Hubbard
Journal:  J Comput Aided Mol Des       Date:  1995-10       Impact factor: 3.686

6.  Characterization of substrate binding and catalysis in the potential antibacterial target N-acetylglucosamine-1-phosphate uridyltransferase (GlmU).

Authors:  Igor Mochalkin; Sandra Lightle; Yaqi Zhu; Jeffrey F Ohren; Cindy Spessard; Nickolay Y Chirgadze; Craig Banotai; Michael Melnick; Laura McDowell
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

7.  The structural origins of the unusual specificities observed in the isolation of chymopapain M and actinidin by covalent chromatography and the lack of inhibition of chymopapain M by cystatin.

Authors:  M P Thomas; C Verma; S M Boyd; K Brocklehurst
Journal:  Biochem J       Date:  1995-02-15       Impact factor: 3.857

8.  TAP score: torsion angle propensity normalization applied to local protein structure evaluation.

Authors:  Silvio C E Tosatto; Roberto Battistutta
Journal:  BMC Bioinformatics       Date:  2007-05-15       Impact factor: 3.169
  8 in total

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