Literature DB >> 14764565

FORTE: a profile-profile comparison tool for protein fold recognition.

Kentaro Tomii1, Yutaka Akiyama.   

Abstract

We present FORTE, a profile-profile comparison tool for protein fold recognition. Users can submit a protein sequence to explore the possibilities of structural similarity existing in known structures. Results are reported via email in the form of pairwise alignments.

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Year:  2004        PMID： 14764565     DOI： 10.1093/bioinformatics/btg474

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  39 in total

1.  An assessment of substitution scores for protein profile-profile comparison.

Authors:  Xugang Ye; Guoli Wang; Stephen F Altschul
Journal:  Bioinformatics       Date:  2011-10-13       Impact factor: 6.937

2.  A common substrate recognition mode conserved between katanin p60 and VPS4 governs microtubule severing and membrane skeleton reorganization.

Authors:  Naoko Iwaya; Yohta Kuwahara; Yoshie Fujiwara; Natsuko Goda; Takeshi Tenno; Kohei Akiyama; Shogo Mase; Hidehito Tochio; Takahisa Ikegami; Masahiro Shirakawa; Hidekazu Hiroaki
Journal:  J Biol Chem       Date:  2010-03-25       Impact factor: 5.157

3.  Chondroitin sulfate synthase-2/chondroitin polymerizing factor has two variants with distinct function.

Authors:  Hiroyasu Ogawa; Masafumi Shionyu; Nobuo Sugiura; Sonoko Hatano; Naoko Nagai; Yukihiko Kubota; Kiyoji Nishiwaki; Takashi Sato; Masanori Gotoh; Hisashi Narimatsu; Katsuji Shimizu; Koji Kimata; Hideto Watanabe
Journal:  J Biol Chem       Date:  2010-08-21       Impact factor: 5.157

4.  Fine-tuning of protein domain boundary by minimizing potential coiled coil regions.

Authors:  Naoko Iwaya; Natsuko Goda; Satoru Unzai; Kenichiro Fujiwara; Toshiki Tanaka; Kentaro Tomii; Hidehito Tochio; Masahiro Shirakawa; Hidekazu Hiroaki
Journal:  J Biomol NMR       Date:  2006-12-16       Impact factor: 2.835

5.  Heteronuclear multidimensional NMR and homology modelling studies of the C-terminal nucleotide-binding domain of the human mitochondrial ABC transporter ABCB6.

Authors:  Kaori Kurashima-Ito; Teppei Ikeya; Hiroshi Senbongi; Hidehito Tochio; Tsutomu Mikawa; Takehiko Shibata; Yutaka Ito
Journal:  J Biomol NMR       Date:  2006-06-08       Impact factor: 2.835

6.  The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold.

Authors:  Yohta Kuwahara; Ayako Ohno; Taichi Morii; Hideshi Yokoyama; Ikuo Matsui; Hidehito Tochio; Masahiro Shirakawa; Hidekazu Hiroaki
Journal:  Protein Sci       Date:  2008-08-07       Impact factor: 6.725

7.  Mitochondrial sorting and assembly machinery operates by β-barrel switching.

Authors:  Hironori Takeda; Akihisa Tsutsumi; Tomohiro Nishizawa; Caroline Lindau; Jon V Busto; Lena-Sophie Wenz; Lars Ellenrieder; Kenichiro Imai; Sebastian P Straub; Waltraut Mossmann; Jian Qiu; Yu Yamamori; Kentaro Tomii; Junko Suzuki; Takeshi Murata; Satoshi Ogasawara; Osamu Nureki; Thomas Becker; Nikolaus Pfanner; Nils Wiedemann; Masahide Kikkawa; Toshiya Endo
Journal:  Nature       Date:  2021-01-06       Impact factor: 49.962

8.  Cell Wall Anchoring of the Campylobacter Antigens to Lactococcus lactis.

Authors:  Patrycja A Kobierecka; Barbara Olech; Monika Książek; Katarzyna Derlatka; Iwona Adamska; Paweł M Majewski; Elżbieta K Jagusztyn-Krynicka; Agnieszka K Wyszyńska
Journal:  Front Microbiol       Date:  2016-02-18       Impact factor: 5.640

9.  Protein remote homology detection by combining Chou's distance-pair pseudo amino acid composition and principal component analysis.

Authors:  Bin Liu; Junjie Chen; Xiaolong Wang
Journal:  Mol Genet Genomics       Date:  2015-04-21       Impact factor: 3.291

10.  Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.

Authors:  Jerzy Orlowski; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2008-05-02       Impact factor: 16.971
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