Literature DB >> 14760717

A technical trick for studying proteomics in parallel to transcriptomics in symbiotic root-fungus interactions.

Eliane Dumas-Gaudot1, Nardjis Amiour, Stéphanie Weidmann, Gwénaëlle Bestel-Corre, Benoit Valot, Sébastien Lenogue, Vivienne Gianinazzi-Pearson, Silvio Gianinazzi.   

Abstract

We have developed a protocol in which proteins and mRNA can be analyzed from single root samples. This experimental design was validated in arbuscular mycorrhiza by comparing the proteins profiles obtained with those from a classical protein extraction process. It is a step forward to make simultaneous proteome and transcriptiome profiling possible.

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Year:  2004        PMID： 14760717     DOI： 10.1002/pmic.200300627

Source DB:  PubMed          Journal:  Proteomics        ISSN： 1615-9853            Impact factor:   3.984


  6 in total

Review 1.  Proteomics as a tool to monitor plant-microbe endosymbioses in the rhizosphere.

Authors:  G Bestel-Corre; E Dumas-Gaudot; S Gianinazzi
Journal:  Mycorrhiza       Date:  2003-11-19       Impact factor: 3.387

Review 2.  Exploiting new systems-based strategies to elucidate plant-bacterial interactions in the rhizosphere.

Authors:  P D Kiely; J M Haynes; C H Higgins; A Franks; G L Mark; J P Morrissey; F O'Gara
Journal:  Microb Ecol       Date:  2006-04-05       Impact factor: 4.552

3.  MudPIT analysis: application to human heart tissue.

Authors:  Kelli G Kline; Christine C Wu
Journal:  Methods Mol Biol       Date:  2009

4.  Differential expression proteomics to investigate responses and resistance to Orobanche crenata in Medicago truncatula.

Authors:  Ma Angeles Castillejo; Ana M Maldonado; Eliane Dumas-Gaudot; Mónica Fernández-Aparicio; Rafael Susín; Rubiales Diego; Jesús V Jorrín
Journal:  BMC Genomics       Date:  2009-07-03       Impact factor: 3.969

5.  Membrane-associated proteomics of chickpea identifies Sad1/UNC-84 protein (CaSUN1), a novel component of dehydration signaling.

Authors:  Dinesh Kumar Jaiswal; Poonam Mishra; Pratigya Subba; Divya Rathi; Subhra Chakraborty; Niranjan Chakraborty
Journal:  Sci Rep       Date:  2014-02-28       Impact factor: 4.379

6.  Changes in the core endophytic mycobiome of carrot taproots in response to crop management and genotype.

Authors:  Sahar Abdelrazek; Sulbha Choudhari; Jyothi Thimmapuram; Philipp Simon; Micaela Colley; Tesfaye Mengiste; Lori Hoagland
Journal:  Sci Rep       Date:  2020-08-13       Impact factor: 4.379
  6 in total

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