Literature DB >> 14750992

Analysis of orientations of collagen fibers by novel fiber-tracking software.

Jun Wu1, Bartłomiej Rajwa, David L Filmer, Christoph M Hoffmann, Bo Yuan, Ching-Shoei Chiang, Jennie Sturgis, J Paul Robinson.   

Abstract

Recent evidence supports the notion that biological functions of extracellular matrix (ECM) are highly correlated to not only its composition but also its structure. This article integrates confocal microscopy imaging and image-processing techniques to analyze the microstructural properties of ECM. This report describes a two- and three-dimensional fiber middle-line tracing algorithm that may be used to quantify collagen fibril organization. We utilized computer simulation and statistical analysis to validate the developed algorithm. These algorithms were applied to confocal images of collagen gels made with reconstituted bovine collagen type I, to demonstrate the computation of orientations of individual fibers.

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Year:  2003        PMID: 14750992     DOI: 10.1017/S1431927603030277

Source DB:  PubMed          Journal:  Microsc Microanal        ISSN: 1431-9276            Impact factor:   4.127


  9 in total

Review 1.  Toward single cell traction microscopy within 3D collagen matrices.

Authors:  Matthew S Hall; Rong Long; Xinzeng Feng; Yuling Huang; Chung-Yuen Hui; Mingming Wu
Journal:  Exp Cell Res       Date:  2013-06-25       Impact factor: 3.905

Review 2.  Optical spectroscopy and imaging for the noninvasive evaluation of engineered tissues.

Authors:  Irene Georgakoudi; William L Rice; Marie Hronik-Tupaj; David L Kaplan
Journal:  Tissue Eng Part B Rev       Date:  2008-12       Impact factor: 6.389

3.  A blind spot in confocal reflection microscopy: the dependence of fiber brightness on fiber orientation in imaging biopolymer networks.

Authors:  Louise M Jawerth; Stefan Münster; David A Vader; Ben Fabry; David A Weitz
Journal:  Biophys J       Date:  2010-02-03       Impact factor: 4.033

4.  Rapid three-dimensional quantification of voxel-wise collagen fiber orientation.

Authors:  Zhiyi Liu; Kyle P Quinn; Lucia Speroni; Lisa Arendt; Charlotte Kuperwasser; Carlos Sonnenschein; Ana M Soto; Irene Georgakoudi
Journal:  Biomed Opt Express       Date:  2015-06-03       Impact factor: 3.732

5.  Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer.

Authors:  Jeremy S Bredfeldt; Yuming Liu; Carolyn A Pehlke; Matthew W Conklin; Joseph M Szulczewski; David R Inman; Patricia J Keely; Robert D Nowak; Thomas R Mackie; Kevin W Eliceiri
Journal:  J Biomed Opt       Date:  2014-01       Impact factor: 3.170

6.  Three-dimensional computation of fibre orientation, diameter and branching in segmented image stacks of fibrous networks.

Authors:  Jeremy D Eekhoff; Spencer P Lake
Journal:  J R Soc Interface       Date:  2020-08-05       Impact factor: 4.118

7.  Fiber finding algorithm using stepwise tracing to identify biopolymer fibers in noisy 3D images.

Authors:  Ninna Struck Rossen; Anders Kyrsting; Amato J Giaccia; Janine Terra Erler; Lene Broeng Oddershede
Journal:  Biophys J       Date:  2021-08-17       Impact factor: 3.699

8.  Quantitative morphometric analysis of adult teleost fish by X-ray computed tomography.

Authors:  Venera Weinhardt; Roman Shkarin; Tobias Wernet; Joachim Wittbrodt; Tilo Baumbach; Felix Loosli
Journal:  Sci Rep       Date:  2018-11-08       Impact factor: 4.379

9.  Quantification of the temporal evolution of collagen orientation in mechanically conditioned engineered cardiovascular tissues.

Authors:  Mirjam P Rubbens; Anita Driessen-Mol; Ralf A Boerboom; Marc M J Koppert; Hans C van Assen; Bart M TerHaar Romeny; Frank P T Baaijens; Carlijn V C Bouten
Journal:  Ann Biomed Eng       Date:  2009-05-05       Impact factor: 3.934

  9 in total

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