Literature DB >> 14747018

Annotating the Plasmodium genome and the enigma of the shikimate pathway.

Glenn A McConkey1, John W Pinney, David R Westhead, Kirsten Plueckhahn, Teresa B Fitzpatrick, Peter Macheroux, Barbara Kappes.   

Abstract

The completion of the Plasmodium falciparum genome sequence heralds a new era in the effort to identify all the parasite's genes along with their cellular functions. A combination of bioinformatics and experimental proof will facilitate this process. Many enzymes in metabolic processes have been identified, but several examples exist of incomplete pathways, such as the shikimate pathway. This review uses the example of the shikimate pathway to examine the application of bioinformatics to lead experimental design in post-genomic biology.

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Year:  2004        PMID: 14747018     DOI: 10.1016/j.pt.2003.11.001

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  22 in total

1.  Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements.

Authors:  Thomas A Richards; Joel B Dacks; Samantha A Campbell; Jeffrey L Blanchard; Peter G Foster; Rima McLeod; Craig W Roberts
Journal:  Eukaryot Cell       Date:  2006-09

2.  Crystal structure of 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase from the ESKAPE pathogen Acinetobacter baumannii.

Authors:  Kristin A Sutton; Jennifer Breen; Thomas A Russo; L Wayne Schultz; Timothy C Umland
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-02-16       Impact factor: 1.056

3.  Complex Formation between Two Biosynthetic Enzymes Modifies the Allosteric Regulatory Properties of Both: AN EXAMPLE OF MOLECULAR SYMBIOSIS.

Authors:  Nicola J Blackmore; Ali Reza Nazmi; Richard D Hutton; Melissa N Webby; Edward N Baker; Geoffrey B Jameson; Emily J Parker
Journal:  J Biol Chem       Date:  2015-06-01       Impact factor: 5.157

4.  Infection with conditionally virulent Streptococcus pneumoniae Δpab strains induces antibody to conserved protein antigens but does not protect against systemic infection with heterologous strains.

Authors:  Suneeta Chimalapati; Jonathan Cohen; Emilie Camberlein; Claire Durmort; Helen Baxendale; Corné de Vogel; Alex van Belkum; Jeremy S Brown
Journal:  Infect Immun       Date:  2011-09-26       Impact factor: 3.441

Review 5.  Genomics of apicomplexan parasites.

Authors:  Lakshmipuram Seshadri Swapna; John Parkinson
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-02-22       Impact factor: 8.250

6.  Characterization of the role of para-aminobenzoic acid biosynthesis in folate production by Lactococcus lactis.

Authors:  Arno Wegkamp; Wietske van Oorschot; Willem M de Vos; Eddy J Smid
Journal:  Appl Environ Microbiol       Date:  2007-02-16       Impact factor: 4.792

Review 7.  Targeting purine and pyrimidine metabolism in human apicomplexan parasites.

Authors:  John E Hyde
Journal:  Curr Drug Targets       Date:  2007-01       Impact factor: 3.465

8.  Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Authors:  Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin
Journal:  BMC Bioinformatics       Date:  2012-05-01       Impact factor: 3.169

9.  ApicoAlign: an alignment and sequence search tool for apicomplexan proteins.

Authors:  Jamshaid Ali; Umadevi Paila; Akash Ranjan
Journal:  BMC Genomics       Date:  2011-11-30       Impact factor: 3.969

10.  The mode of action of recombinant Mycobacterium tuberculosis shikimate kinase: kinetics and thermodynamics analyses.

Authors:  Leonardo Astolfi Rosado; Igor Bordin Vasconcelos; Mário Sérgio Palma; Vincent Frappier; Rafael Josef Najmanovich; Diógenes Santiago Santos; Luiz Augusto Basso
Journal:  PLoS One       Date:  2013-05-06       Impact factor: 3.240

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