Literature DB >> 14745818

Evaluation of protein 15N relaxation times by inverse Laplace transformation.

Harri Koskela1, Ilkka Kilpeläinen, Sami Heikkinen.   

Abstract

Relaxation times (T1, T2, T1rho) are usually evaluated from exponential decay data by least-squares fitting methods. For this procedure, the integrals or amplitudes of signals must be determined, which can be laborious with large data sets. Moreover, the fitting requires a priori knowledge of the number of exponential components responsible for the decay. We have adapted inverse Laplace transformation (ILT) for the analysis of relaxation data. Exponential components are resolved with ILT to reciprocal space on their corresponding relaxation rate values. The ILT approach was applied to 3D linewidth-resolved 15N HSQC experiments to evaluate 15N T1 and T2 relaxation times of ubiquitin. The resulting spectrum is a true 3D spectrum, where the signals are separated by their 1H and 15N chemical shifts (HSQC correlations) and by their relaxation rate values (R1 or R2). From this spectrum, the relaxation times can be obtained directly with a simple peak-picking procedure. Copyright 2003 John Wiley & Sons, Ltd.

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Year:  2004        PMID: 14745818     DOI: 10.1002/mrc.1309

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  3 in total

1.  Rapid and accurate processing method for amide proton exchange rate measurement in proteins.

Authors:  Harri Koskela; Outi Heikkinen; Ilkka Kilpeläinen; Sami Heikkinen
Journal:  J Biomol NMR       Date:  2007-02-14       Impact factor: 2.835

2.  Joint non-uniform sampling of all incremented time delays for quicker acquisition in protein relaxation studies.

Authors:  Mateusz Urbańczyk; Michał Nowakowski; Wiktor Koźmiński; Krzysztof Kazimierczuk
Journal:  J Biomol NMR       Date:  2017-05-15       Impact factor: 2.835

3.  Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA--implications for the catalytic mechanism of parvulins.

Authors:  Outi Heikkinen; Raili Seppala; Helena Tossavainen; Sami Heikkinen; Harri Koskela; Perttu Permi; Ilkka Kilpeläinen
Journal:  BMC Struct Biol       Date:  2009-03-24
  3 in total

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