Literature DB >> 14744116

CIBEX: center for information biology gene expression database.

Kazuho Ikeo1, Jun Ishi-i, Takurou Tamura, Takashi Gojobori, Yoshio Tateno.   

Abstract

We describe the current status of the gene expression database CIBEX (Center for Information Biology gene EXpression database, http://cibex.nig.ac.jp), with a data retrieval system in compliance with MIAME, a standard that the MGED Society has developed for comparing and data produced in microarray experiments at different laboratories worldwide. CIBEX serves as a public repository for a wide range of high-throughput experimental data in gene expression research, including microarray-based experiments measuring mRNA, serial analysis of gene expression (SAGE tags), and mass spectrometry proteomic data.

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Year:  2003        PMID: 14744116     DOI: 10.1016/j.crvi.2003.09.034

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  64 in total

1.  DDBJ in the stream of various biological data.

Authors:  S Miyazaki; H Sugawara; K Ikeo; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Conceptual aspects of large meta-analyses with publicly available microarray data: a case study in oncology.

Authors:  Markus Schmidberger; Sabine Lennert; Ulrich Mansmann
Journal:  Bioinform Biol Insights       Date:  2011-01-23

3.  Analysis of microarray studies performed in the neurosciences.

Authors:  Vuokko Aarnio; Jussi Paananen; Garry Wong
Journal:  J Mol Neurosci       Date:  2005       Impact factor: 3.444

4.  Gene-L'EXPO: a tool to extract knowledge From transcriptomes and find 'Literature-Sparse' relationships between genes and tissues.

Authors:  Teruyoshi Hishiki; Issei Tamada; Kousaku Okubo
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

Review 5.  Systems glycobiology: biochemical reaction networks regulating glycan structure and function.

Authors:  Sriram Neelamegham; Gang Liu
Journal:  Glycobiology       Date:  2011-03-24       Impact factor: 4.313

6.  BASE--2nd generation software for microarray data management and analysis.

Authors:  Johan Vallon-Christersson; Nicklas Nordborg; Martin Svensson; Jari Häkkinen
Journal:  BMC Bioinformatics       Date:  2009-10-12       Impact factor: 3.169

7.  FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.

Authors:  Jessica Severin; Andrew M Waterhouse; Hideya Kawaji; Timo Lassmann; Erik van Nimwegen; Piotr J Balwierz; Michiel Jl de Hoon; David A Hume; Piero Carninci; Yoshihide Hayashizaki; Harukazu Suzuki; Carsten O Daub; Alistair Rr Forrest
Journal:  Genome Biol       Date:  2009-04-19       Impact factor: 13.583

8.  Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.

Authors:  Kengo Kinoshita; Takeshi Obayashi
Journal:  Bioinformatics       Date:  2009-07-20       Impact factor: 6.937

9.  MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines.

Authors:  Yukari Takahashi; Alistair R R Forrest; Emi Maeno; Takehiro Hashimoto; Carsten O Daub; Jun Yasuda
Journal:  PLoS One       Date:  2009-08-18       Impact factor: 3.240

10.  Towards large-scale sample annotation in gene expression repositories.

Authors:  Erik Pitzer; Ronilda Lacson; Christian Hinske; Jihoon Kim; Pedro Af Galante; Lucila Ohno-Machado
Journal:  BMC Bioinformatics       Date:  2009-09-17       Impact factor: 3.169

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