Literature DB >> 14744104

ORESTES are enriched in rare exon usage variants affecting the encoded proteins.

Noboru Jo Sakabe1, Jorge E S de Souza, Pedro A F Galante, Paulo S L de Oliveira, Fábio Passetti, Helena Brentani, Elisson C Osório, André C Zaiats, Maarten R Leerkes, João Paulo Kitajima, Ricardo R Brentani, Robert L Strausberg, Andrew J G Simpson, Sandro José de Souza.   

Abstract

A significant fraction of the variability found in the human transcriptome is due to alternative splicing, including alternative exon usage (AEU), intron retention and use of cryptic splice sites. We present a comparison of a large-scale analysis of AEU in the human transcriptome through genome mapping of Open Reading Frame ESTs (ORESTES) and conventional ESTs. It is shown here that ORESTES probe low abundant messages more efficiently. In addition, most of the variants detected by ORESTES affect the structure of the corresponding proteins.

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Year:  2003        PMID: 14744104     DOI: 10.1016/j.crvi.2003.09.027

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  6 in total

1.  Detection and evaluation of intron retention events in the human transcriptome.

Authors:  Pedro Alexandre Favoretto Galante; Noboru Jo Sakabe; Natanja Kirschbaum-Slager; Sandro José de Souza
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

2.  The impact of SNPs on the interpretation of SAGE and MPSS experimental data.

Authors:  Ana Paula M Silva; Jorge E S De Souza; Pedro A F Galante; Gregory J Riggins; Sandro J De Souza; Anamaria A Camargo
Journal:  Nucleic Acids Res       Date:  2004-11-23       Impact factor: 16.971

3.  Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders.

Authors:  Jorge E S de Souza; Rodrigo F Ramalho; Pedro A F Galante; Diogo Meyer; Sandro J de Souza
Journal:  Nucleic Acids Res       Date:  2011-03-11       Impact factor: 16.971

4.  CAFTAN: a tool for fast mapping, and quality assessment of cDNAs.

Authors:  Coral del Val; Vladimir Yurjevich Kuryshev; Karl-Heinz Glatting; Peter Ernst; Agnes Hotz-Wagenblatt; Annemarie Poustka; Sandor Suhai; Stefan Wiemann
Journal:  BMC Bioinformatics       Date:  2006-10-25       Impact factor: 3.169

5.  Sense-antisense pairs in mammals: functional and evolutionary considerations.

Authors:  Pedro A F Galante; Daniel O Vidal; Jorge E de Souza; Anamaria A Camargo; Sandro J de Souza
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

6.  Computational analysis of splicing errors and mutations in human transcripts.

Authors:  Yerbol Z Kurmangaliyev; Mikhail S Gelfand
Journal:  BMC Genomics       Date:  2008-01-14       Impact factor: 3.969

  6 in total

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