Literature DB >> 14734326

EST-PAGE--managing and analyzing EST data.

Lakshmi K Matukumalli1, John J Grefenstette, Tad S Sonstegard, Curtis P Van Tassell.   

Abstract

UNLABELLED: EST-PAGE provides a bioinformatics solution for expressed sequence tags (EST) data entry, database management, GenBank submission, process control and data retrieval from a unified web interface that can be easily customized and adapted by groups working on diverse EST sequencing projects. AVAILABILITY: The system and source code are available upon request from the authors. SUPPLEMENTARY INFORMATION: http://EST-PAGE.binf.gmu.edu

Mesh：

Year:  2004        PMID： 14734326     DOI： 10.1093/bioinformatics/btg411

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  Identification of miRNAs in sorghum by using bioinformatics approach.

Authors:  Amit Katiyar; Shuchi Smita; Viswanathan Chinnusamy; Dev Mani Pandey; Kailash Bansal
Journal:  Plant Signal Behav       Date:  2012-02-01

2.  Identification of soybean microRNAs and their targets.

Authors:  Baohong Zhang; Xiaoping Pan; Edmund J Stellwag
Journal:  Planta       Date:  2008-09-25       Impact factor: 4.116

3.  PIMS sequencing extension: a laboratory information management system for DNA sequencing facilities.

Authors:  Peter V Troshin; Vincent Lg Postis; Denise Ashworth; Stephen A Baldwin; Michael J McPherson; Geoffrey J Barton
Journal:  BMC Res Notes       Date:  2011-03-07

4.  EST-PAC a web package for EST annotation and protein sequence prediction.

Authors:  Christophe Lefèvre; Yvan Strahm; David Powell
Journal:  Source Code Biol Med       Date:  2006-10-12

5.  JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Authors:  Mariano Latorre; Herman Silva; Juan Saba; Carito Guziolowski; Paula Vizoso; Veronica Martinez; Jonathan Maldonado; Andrea Morales; Rodrigo Caroca; Veronica Cambiazo; Reinaldo Campos-Vargas; Mauricio Gonzalez; Ariel Orellana; Julio Retamales; Lee A Meisel
Journal:  BMC Bioinformatics       Date:  2006-11-23       Impact factor: 3.169

6.  EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries.

Authors:  Robin P Smith; William J Buchser; Marcus B Lemmon; Jose R Pardinas; John L Bixby; Vance P Lemmon
Journal:  BMC Bioinformatics       Date:  2008-04-10       Impact factor: 3.169

7.  ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Authors:  Zuojian Tang; Jeong-Hyeon Choi; Chris Hemmerich; Ankita Sarangi; John K Colbourne; Qunfeng Dong
Journal:  BMC Genomics       Date:  2009-04-21       Impact factor: 3.969

8.  EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.

Authors:  Javier Forment; Francisco Gilabert; Antonio Robles; Vicente Conejero; Fernando Nuez; Jose M Blanca
Journal:  BMC Bioinformatics       Date:  2008-01-07       Impact factor: 3.169
  8 in total

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