Literature DB >> 14734321

LVB: parsimony and simulated annealing in the search for phylogenetic trees.

D Barker1.   

Abstract

UNLABELLED: The program LVB seeks parsimonious phylogenies from nucleotide alignments, using the simulated annealing heuristic. LVB runs fast and gives high quality results. AVAILABILITY: The software is available at http://www.rubic.reading.ac.uk/lvb/ SUPPLEMENTARY INFORMATION: SUPPLEMENTARY INFORMATION may be downloaded from http://www.rubic.reading.ac.uk/~daniel/

Mesh：

Year:  2004        PMID： 14734321     DOI： 10.1093/bioinformatics/btg402

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  Optimal structural inference of signaling pathways from unordered and overlapping gene sets.

Authors:  Lipi R Acharya; Thair Judeh; Guangdi Wang; Dongxiao Zhu
Journal:  Bioinformatics       Date:  2011-12-22       Impact factor: 6.937

2.  The biochemical differentiation of Enterobacter sakazakii genotypes.

Authors:  Carol Iversen; Mike Waddington; Jim J Farmer; Stephen J Forsythe
Journal:  BMC Microbiol       Date:  2006-10-26       Impact factor: 3.605

3.  On simulated annealing phase transitions in phylogeny reconstruction.

Authors:  Maximilian A R Strobl; Daniel Barker
Journal:  Mol Phylogenet Evol       Date:  2016-05-02       Impact factor: 4.286

4.  Efficient tree searches with available algorithms.

Authors:  Gonzalo Giribet
Journal:  Evol Bioinform Online       Date:  2007-11-12       Impact factor: 1.625

5.  Local search for the generalized tree alignment problem.

Authors:  Andrés Varón; Ward C Wheeler
Journal:  BMC Bioinformatics       Date:  2013-02-26       Impact factor: 3.169
  5 in total

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