Literature DB >> 14729282

Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism.

A Kremling1, S Fischer, T Sauter, K Bettenbrock, E D Gilles.   

Abstract

The analysis of metabolic pathways with mathematical models contributes to the better understanding of the behavior of metabolic processes. This paper presents the analysis of a mathematical model for carbohydrate uptake and metabolism in Escherichia coli. It is shown that the dynamic processes cover a broad time span from some milliseconds to several hours. Based on this analysis the fast processes could be described with steady-state characteristic curves. A subsequent robustness analysis of the model parameters shows that the fast part of the system may act as a filter for the slow part of the system; the sensitivities of the fast system are conserved. From these findings it is concluded that the slow part of the system shows some robustness against changes in parameters of the fast subsystem, i.e. if a parameter shows no sensitivity for the fast part of the system, it will also show no sensitivity for the slow part of the system.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 14729282     DOI: 10.1016/j.biosystems.2003.09.001

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  5 in total

Review 1.  How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria.

Authors:  Josef Deutscher; Christof Francke; Pieter W Postma
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

2.  Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants.

Authors:  Ruilian Yao; Yuki Hirose; Dayanidhi Sarkar; Kenji Nakahigashi; Qin Ye; Kazuyuki Shimizu
Journal:  Microb Cell Fact       Date:  2011-08-11       Impact factor: 5.328

Review 3.  Importance of understanding the main metabolic regulation in response to the specific pathway mutation for metabolic engineering of Escherichia coli.

Authors:  Yu Matsuoka; Kazuyuki Shimizu
Journal:  Comput Struct Biotechnol J       Date:  2013-01-16       Impact factor: 7.271

4.  Short relaxation times but long transient times in both simple and complex reaction networks.

Authors:  Adrien Henry; Olivier C Martin
Journal:  J R Soc Interface       Date:  2016-07       Impact factor: 4.118

5.  Analysis of global control of Escherichia coli carbohydrate uptake.

Authors:  Andreas Kremling; Katja Bettenbrock; Ernst Dieter Gilles
Journal:  BMC Syst Biol       Date:  2007-09-13
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.