Literature DB >> 14715302

Comparison of storage methods for reverse-transcriptase PCR amplification of rotavirus RNA from gorilla (Gorilla g. gorilla) fecal samples.

Christopher A Whittier1, William Horne, Barrett Slenning, Michael Loomis, Michael K Stoskopf.   

Abstract

Detection of enteric viral nucleic acids in preserved gorilla fecal specimens was investigated using reverse transcription polymerase chain reaction (rt-PCR). A commercially available viral RNA extraction kit was used to isolate nucleic acids from captive gorilla fecal samples seeded with rotavirus and stored in ethanol, formalin, a commercial RNA preservation solution, guanidine thiocyanate buffer (GT), and samples dried in tubes containing silica gel. Nucleic acids were extracted at 1, 7, 70 and 180 days and used for rt-PCR amplification of specific rotavirus RNA sequences. Successful rt-PCR amplification of the target product varied according to storage conditions, and storage time. Only samples stored in GT gave 100% positive results at 180 days. It is recommended that fecal samples be collected in GT for viral RNA analysis.

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Year:  2004        PMID: 14715302     DOI: 10.1016/j.jviromet.2003.10.003

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  7 in total

1.  Exotic rotaviruses in animals and rotaviruses in exotic animals.

Authors:  Souvik Ghosh; Nobumichi Kobayashi
Journal:  Virusdisease       Date:  2014-02-13

2.  Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus.

Authors:  Owen D Solberg; Maria Eloisa Hasing; Gabriel Trueba; Joseph N S Eisenberg
Journal:  Virology       Date:  2009-01-08       Impact factor: 3.616

3.  Exfoliated cells in stool: a source for reverse transcription-PCR-based analysis of biomarkers of gastrointestinal cancer.

Authors:  Ying Jie Yu; Adhip P N Majumdar; Jordan M Nechvatal; Jeffrey L Ram; Marc D Basson; Lance K Heilbrun; Ikuko Kato
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2008-02       Impact factor: 4.254

4.  Effect of preservative on recoverable RT-PCR amplicon length from influenza A virus in bird feces.

Authors:  David L Evers; Richard D Slemons; Jeffery K Taubenberger
Journal:  Avian Dis       Date:  2007-12       Impact factor: 1.577

5.  Use of guanidine thiocyanate-based nucleic acid extraction buffers to inactivate poliovirus in potentially infectious materials.

Authors:  Michelle J Honeywood; Stacey Jeffries-Miles; Kimberly Wong; Chelsea Harrington; Cara C Burns; M Steven Oberste; Michael D Bowen; Everardo Vega
Journal:  J Virol Methods       Date:  2021-08-09       Impact factor: 2.623

6.  Characterization of rotavirus infection in children with acute gastroenteritis in Bengo province, Northwestern Angola, prior to vaccine introduction.

Authors:  Carolina Gasparinho; João Piedade; Maria Clara Mirante; Cristina Mendes; Carlos Mayer; Susana Vaz Nery; Miguel Brito; Claudia Istrate
Journal:  PLoS One       Date:  2017-04-19       Impact factor: 3.240

7.  A comparative analysis of preservation techniques for the optimal molecular detection of hookworm DNA in a human fecal specimen.

Authors:  Marina Papaiakovou; Nils Pilotte; Ben Baumer; Jessica Grant; Kristjana Asbjornsdottir; Fabian Schaer; Yan Hu; Raffi Aroian; Judd Walson; Steven A Williams
Journal:  PLoS Negl Trop Dis       Date:  2018-01-18
  7 in total

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