Literature DB >> 14715286

Use of protein biotinylation in vivo for chromatin immunoprecipitation.

Antoine Viens1, Undine Mechold, Heike Lehrmann, Annick Harel-Bellan, Vasily Ogryzko.   

Abstract

We describe a system designed to express biotinylated proteins in mammalian cells in vivo and its application to the study of protein-DNA interactions in vivo by chromatin immunoprecipitation (ChIP). The system is based on coexpression of the target protein fused to a short biotin acceptor domain together with the biotinylating enzyme BirA from Escherichia coli. The superior strength of the biotin-avidin interaction allows one to employ more stringent washing conditions in the ChIP protocol, resulting in a better signal/noise ratio.

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Year:  2004        PMID: 14715286     DOI: 10.1016/j.ab.2003.10.015

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  24 in total

1.  Targeting quantum dots to surface proteins in living cells with biotin ligase.

Authors:  Mark Howarth; Keizo Takao; Yasunori Hayashi; Alice Y Ting
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-16       Impact factor: 11.205

2.  Metabolic biotinylation of recombinant antibody by biotin ligase retained in the endoplasmic reticulum.

Authors:  Bhaswati Barat; Anna M Wu
Journal:  Biomol Eng       Date:  2007-02-15

3.  Use of protein biotinylation in vivo for immunoelectron microscopic localization of a specific protein isoform.

Authors:  Antoine Viens; Francis Harper; Evelyne Pichard; Martine Comisso; Gérard Pierron; Vasily Ogryzko
Journal:  J Histochem Cytochem       Date:  2008-06-23       Impact factor: 2.479

4.  Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis.

Authors:  Ming Yu; Laura Riva; Huafeng Xie; Yocheved Schindler; Tyler B Moran; Yong Cheng; Duonan Yu; Ross Hardison; Mitchell J Weiss; Stuart H Orkin; Bradley E Bernstein; Ernest Fraenkel; Alan B Cantor
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

Review 5.  Proximity Dependent Biotinylation: Key Enzymes and Adaptation to Proteomics Approaches.

Authors:  Payman Samavarchi-Tehrani; Reuben Samson; Anne-Claude Gingras
Journal:  Mol Cell Proteomics       Date:  2020-03-03       Impact factor: 5.911

6.  Design of embedded chimeric peptide nucleic acids that efficiently enter and accurately reactivate gene expression in vivo.

Authors:  Joy Chen; Kenneth R Peterson; Camelia Iancu-Rubin; James J Bieker
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

7.  Novel mechanism of positive versus negative regulation by thyroid hormone receptor β1 (TRβ1) identified by genome-wide profiling of binding sites in mouse liver.

Authors:  Preeti Ramadoss; Brian J Abraham; Linus Tsai; Yiming Zhou; Ricardo H Costa-e-Sousa; Felix Ye; Martin Bilban; Keji Zhao; Anthony N Hollenberg
Journal:  J Biol Chem       Date:  2013-11-27       Impact factor: 5.157

8.  High-throughput biotinylation of proteins.

Authors:  Brian K Kay; Sang Thai; Veronica V Volgina
Journal:  Methods Mol Biol       Date:  2009

9.  Differential cooperation between heterochromatin protein HP1 isoforms and MyoD in myoblasts.

Authors:  Hakima Yahi; Lauriane Fritsch; Ophelie Philipot; Valentina Guasconi; Mouloud Souidi; Philippe Robin; Anna Polesskaya; Regine Losson; Annick Harel-Bellan; Slimane Ait-Si-Ali
Journal:  J Biol Chem       Date:  2008-07-02       Impact factor: 5.157

10.  SnAvi--a new tandem tag for high-affinity protein-complex purification.

Authors:  Ursula Schäffer; Andreas Schlosser; Kristian M Müller; Angelika Schäfer; Nenad Katava; Ralf Baumeister; Ekkehard Schulze
Journal:  Nucleic Acids Res       Date:  2010-01-04       Impact factor: 16.971

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