Literature DB >> 14712717

Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system.

Paul Babitzke1, Janell Schaak, Alexander V Yakhnin, Philip C Bevilacqua.   

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Year:  2003        PMID： 14712717     DOI： 10.1016/S0076-6879(03)71030-1

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  10 in total

1.  Structure of the nucleotide complex of PyrR, the pyr attenuation protein from Bacillus caldolyticus, suggests dual regulation by pyrimidine and purine nucleotides.

Authors:  Preethi Chander; Kari M Halbig; Jamie K Miller; Christopher J Fields; Heather K S Bonner; Gail K Grabner; Robert L Switzer; Janet L Smith
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

2.  Secondary structural entropy in RNA switch (Riboswitch) identification.

Authors:  Amirhossein Manzourolajdad; Jonathan Arnold
Journal:  BMC Bioinformatics       Date:  2015-04-28       Impact factor: 3.169

3.  Complex regulation of the global regulatory gene csrA: CsrA-mediated translational repression, transcription from five promoters by Eσ⁷⁰ and Eσ(S), and indirect transcriptional activation by CsrA.

Authors:  Helen Yakhnin; Alexander V Yakhnin; Carol S Baker; Elena Sineva; Igor Berezin; Tony Romeo; Paul Babitzke
Journal:  Mol Microbiol       Date:  2011-06-23       Impact factor: 3.501

4.  TRAP-5' stem loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region.

Authors:  Adam P McGraw; Philip C Bevilacqua; Paul Babitzke
Journal:  RNA       Date:  2007-09-19       Impact factor: 4.942

5.  The trp RNA-binding attenuation protein of Bacillus subtilis regulates translation of the tryptophan transport gene trpP (yhaG) by blocking ribosome binding.

Authors:  Helen Yakhnin; Hong Zhang; Alexander V Yakhnin; Paul Babitzke
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

6.  Phylogenetic conservation of RNA secondary and tertiary structure in the trpEDCFBA operon leader transcript in Bacillus.

Authors:  Janell E Schaak; Paul Babitzke; Philip C Bevilacqua
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

7.  TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator.

Authors:  Kristine D Potter; Natalie M Merlino; Timothy Jacobs; Paul Gollnick
Journal:  Nucleic Acids Res       Date:  2010-11-21       Impact factor: 16.971

8.  Ribosomal protein L10(L12)4 autoregulates expression of the Bacillus subtilis rplJL operon by a transcription attenuation mechanism.

Authors:  Helen Yakhnin; Alexander V Yakhnin; Paul Babitzke
Journal:  Nucleic Acids Res       Date:  2015-06-22       Impact factor: 16.971

9.  The Bacillus subtilis TRAP protein can induce transcription termination in the leader region of the tryptophan biosynthetic (trp) operon independent of the trp attenuator RNA.

Authors:  Natalie M McAdams; Paul Gollnick
Journal:  PLoS One       Date:  2014-02-04       Impact factor: 3.240

10.  Importance of Anion-π Interactions in RNA GAAA and GGAG Tetraloops: A Combined MD and QM Study.

Authors:  Reza Esmaeeli; María de Las Nieves Piña; Antonio Frontera; Alberto Pérez; Antonio Bauzá
Journal:  J Chem Theory Comput       Date:  2021-09-29       Impact factor: 6.006
  10 in total

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