Literature DB >> 14712697

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

Jayanta Mukhopadhyay1, Vladimir Mekler, Ekaterine Kortkhonjia, Achillefs N Kapanidis, Yon W Ebright, Richard H Ebright.   

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Year:  2003        PMID: 14712697     DOI: 10.1016/S0076-6879(03)71010-6

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


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  21 in total

1.  Promoter Escape with Bacterial Two-component σ Factor Suggests Retention of σ Region Two in the Elongation Complex.

Authors:  Shreya Sengupta; Ranjit Kumar Prajapati; Jayanta Mukhopadhyay
Journal:  J Biol Chem       Date:  2015-09-23       Impact factor: 5.157

2.  Bacillus subtilis δ Factor Functions as a Transcriptional Regulator by Facilitating the Open Complex Formation.

Authors:  Ranjit Kumar Prajapati; Shreya Sengupta; Paulami Rudra; Jayanta Mukhopadhyay
Journal:  J Biol Chem       Date:  2015-11-05       Impact factor: 5.157

3.  Analysis of Bacterial Transcription by "Massively Systematic Transcript End Readout," MASTER.

Authors:  Irina O Vvedenskaya; Seth R Goldman; Bryce E Nickels
Journal:  Methods Enzymol       Date:  2018-10-12       Impact factor: 1.600

4.  Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation.

Authors:  Nam Ki Lee; Achillefs N Kapanidis; You Wang; Xavier Michalet; Jayanta Mukhopadhyay; Richard H Ebright; Shimon Weiss
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

5.  Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

Authors:  Emmanuel Margeat; Achillefs N Kapanidis; Philip Tinnefeld; You Wang; Jayanta Mukhopadhyay; Richard H Ebright; Shimon Weiss
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

6.  Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy.

Authors:  Oana Coban; Don C Lamb; Evgeny Zaychikov; Hermann Heumann; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

7.  Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation.

Authors:  Anirban Chakraborty; Abhishek Mazumder; Miaoxin Lin; Adam Hasemeyer; Qumiao Xu; Dongye Wang; Yon W Ebright; Richard H Ebright
Journal:  Methods Mol Biol       Date:  2015

8.  Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions.

Authors:  Lance M Hellman; Michael G Fried
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 9.  Single-molecule studies of RNA polymerase: motoring along.

Authors:  Kristina M Herbert; William J Greenleaf; Steven M Block
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 10.  Fluorescent methods to study transcription initiation and transition into elongation.

Authors:  Aishwarya P Deshpande; Shemaila Sultana; Smita S Patel
Journal:  Exp Suppl       Date:  2014
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