Literature DB >> 14705776

Purification, analysis, and preservation of reduced nicotinamide adenine dinucleotide 2'-phosphate.

Kelli A Markham1, R Steven Sikorski, Amnon Kohen.   

Abstract

Nicotinamide-containing cofactors are ubiquitous in biological systems. Consequently, numerous assays have been developed to study such systems that involve a variety of derivatives and isotopically labeled forms of these cofactors. Often the nicotinamide ring is labeled at the C-4 position which is directly involved in the hydride transfer chemistry catalyzed by nicotinamide-dependent enzymes. A label remote from the reactive center is often also required to follow the course of a reaction or the location of the cofactor. Since the necessary labeling pattern can be as unique as the designed experiment, these cofactors need to be synthesized, analyzed, and, most preferably, preserved. The micro-scale preservation of reduced nicotinamides has long been a challenge due to the inherent lability of the reduced cofactors. Furthermore, it has been found that the reduced 2'-phosphorylated cofactor is even less stable (i.e., reduced nicotinamide adenine dinucleotide phosphate (NADPH) is more labile than reduced nicotinamide adenine dinucleotide). Presented here are methods that were established to purify nicotinamide cofactors via reverse-phase high-performance liquid chromatography (HPLC) and, most importantly, to stabilize NADPH under optimal conditions for long-term storage. Additionally, an analytical HPLC method which achieves 7-min resolution between oxidized and reduced cofactors was developed. This method also results in over 4-min resolution of these nicotinamide cofactors from various derivatives of folic acid. This analysis affords a new analytical assay for the dihydrofolate reductase-catalyzed reaction and several dehydrogenases involved in folic acid metabolism.

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Year:  2003        PMID: 14705776     DOI: 10.1016/j.ab.2003.07.010

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  16 in total

1.  The role of enzyme dynamics and tunnelling in catalysing hydride transfer: studies of distal mutants of dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

2.  Effects of a distal mutation on active site chemistry.

Authors:  Lin Wang; Scott Tharp; Tzvia Selzer; Stephen J Benkovic; Amnon Kohen
Journal:  Biochemistry       Date:  2006-02-07       Impact factor: 3.162

3.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

4.  Triple isotopic labeling and kinetic isotope effects: exposing H-transfer steps in enzymatic systems.

Authors:  Arundhuti Sen; Atsushi Yahashiri; Amnon Kohen
Journal:  Biochemistry       Date:  2011-06-30       Impact factor: 3.162

5.  Microscale synthesis and kinetic isotope effect analysis of (4R)-[Ad-14C, 4-2H] NADPH and (4R)-[Ad-3H,4-2H] NADPH.

Authors:  Atsushi Yahashiri; Arundhuti Sen; Amnon Kohen
Journal:  J Labelled Comp Radiopharm       Date:  2009-09-15       Impact factor: 1.921

6.  Self-assembled enzymatic monolayer directly bound to a gold surface: activity and molecular recognition force spectroscopy studies.

Authors:  Lindsay R Ditzler; Arundhuti Sen; Michael J Gannon; Amnon Kohen; Alexei V Tivanski
Journal:  J Am Chem Soc       Date:  2011-08-04       Impact factor: 15.419

7.  Preservation of protein dynamics in dihydrofolate reductase evolution.

Authors:  Kevin Francis; Vanja Stojkovic; Amnon Kohen
Journal:  J Biol Chem       Date:  2013-10-24       Impact factor: 5.157

8.  Hydride Transfer in DHFR by Transition Path Sampling, Kinetic Isotope Effects, and Heavy Enzyme Studies.

Authors:  Zhen Wang; Dimitri Antoniou; Steven D Schwartz; Vern L Schramm
Journal:  Biochemistry       Date:  2015-12-23       Impact factor: 3.162

9.  Network of remote and local protein dynamics in dihydrofolate reductase catalysis.

Authors:  Priyanka Singh; Kevin Francis; Amnon Kohen
Journal:  ACS Catal       Date:  2015-04-08       Impact factor: 13.084

10.  Synthesis of radiolabeled nicotinamide cofactors from labeled pyridines: versatile probes for enzyme kinetics.

Authors:  Arundhuti Sen; Vanja Stojković; Amnon Kohen
Journal:  Anal Biochem       Date:  2012-08-23       Impact factor: 3.365

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