Literature DB >> 14705081

NMR spectroscopy tools for structure-aided drug design.

Steve W Homans1.   

Abstract

Biomolecular NMR spectroscopy has expanded dramatically in recent years and is now a powerful tool for the study of structure, dynamics, and interactions of biomolecules. Previous limitations with respect to molecular size are no longer a primary barrier, and systems as large as 900 kDa were recently studied. NMR spectroscopy is already well-established as an efficient method for ligand screening. A number of recently developed techniques show promise as aids in structure-based drug design, for example, in the rapid determination of global protein folds, the structural characterization of ligand-protein complexes, and the derivation of thermodynamic parameters. An advantage of the method is that all these interactions can be studied in solution--time-consuming crystallization is not necessary. This Review focuses on recent developments in NMR spectroscopy and how they might be of value in removing some of the current "bottlenecks" in structure-based drug discovery.

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Year:  2004        PMID: 14705081     DOI: 10.1002/anie.200300581

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  11 in total

1.  Structural and functional characterization of CFE88: evidence that a conserved and essential bacterial protein is a methyltransferase.

Authors:  Keith L Constantine; Stanley R Krystek; Matthew D Healy; Michael L Doyle; Nathan O Siemers; Jane Thanassi; Ning Yan; Dianlin Xie; Valentina Goldfarb; Joseph Yanchunas; Li Tao; Brian A Dougherty; Bennett T Farmer
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

2.  Bound-state residual dipolar couplings for rapidly exchanging ligands of His-tagged proteins.

Authors:  Ronald D Seidel; Tiandi Zhuang; James H Prestegard
Journal:  J Am Chem Soc       Date:  2007-03-27       Impact factor: 15.419

3.  Data quality in drug discovery: the role of analytical performance in ligand binding assays.

Authors:  Hermann Wätzig; Imke Oltmann-Norden; Franziska Steinicke; Hassan A Alhazmi; Markus Nachbar; Deia Abd El-Hady; Hassan M Albishri; Knut Baumann; Thomas Exner; Frank M Böckler; Sami El Deeb
Journal:  J Comput Aided Mol Des       Date:  2015-06-13       Impact factor: 3.686

4.  A 1H STD NMR spectroscopic investigation of sialylnucleoside mimetics as probes of CMP-Kdn synthetase.

Authors:  Thomas Haselhorst; Melanie Oschlies; Tareq Abu-Izneid; Milton J Kiefel; Joe Tiralongo; Anja K Münster-Kühnel; Rita Gerardy-Schahn; Mark von Itzstein
Journal:  Glycoconj J       Date:  2006-07       Impact factor: 2.916

Review 5.  Unraveling the structure and function of G protein-coupled receptors through NMR spectroscopy.

Authors:  Irina G Tikhonova; Stefano Costanzi
Journal:  Curr Pharm Des       Date:  2009       Impact factor: 3.116

6.  High-precision frequency measurements: indispensable tools at the core of the molecular-level analysis of complex systems.

Authors:  N Hertkorn; C Ruecker; M Meringer; R Gugisch; M Frommberger; E M Perdue; M Witt; P Schmitt-Kopplin
Journal:  Anal Bioanal Chem       Date:  2007-10-09       Impact factor: 4.142

7.  Estimating protein-ligand binding affinity using high-throughput screening by NMR.

Authors:  Matthew D Shortridge; David S Hage; Gerard S Harbison; Robert Powers
Journal:  J Comb Chem       Date:  2008-10-03

8.  Thermodynamic parameters for the association of fluorinated benzenesulfonamides with bovine carbonic anhydrase II.

Authors:  Vijay M Krishnamurthy; Brooks R Bohall; Chu-Young Kim; Demetri T Moustakas; David W Christianson; George M Whitesides
Journal:  Chem Asian J       Date:  2007-01-08

9.  Fluorinated Carbohydrates as Lectin Ligands: (19)F-Based Direct STD Monitoring for Detection of Anomeric Selectivity.

Authors:  João P Ribeiro; Tammo Diercks; Jesús Jiménez-Barbero; Sabine André; Hans-Joachim Gabius; Francisco Javier Cañada
Journal:  Biomolecules       Date:  2015-11-13

10.  Using quantum mechanical approaches to study biological systems.

Authors:  Kenneth M Merz
Journal:  Acc Chem Res       Date:  2014-06-06       Impact factor: 22.384

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