Literature DB >> 14700546

On the conceptual difficulties in rooting the tree of life.

E Bapteste1, C Brochier.   

Abstract

Rooting the 'tree of life' represents a major challenge for evolutionists. Without such a root, many of the first steps in biological evolution cannot be reconstructed. However, the nature of the last common ancestor of all living beings remains elusive, proof of the difficulty in shedding light on such an ancient event. Here, we highlight the practical difficulties and conceptual reasons that hinder the placement of a universal root. We discuss how, when addressing the question of the root of the tree of life, scientists unconsciously risk using the reasoning pattern of ancient skeptics, unfortunately known only to lead to further uncertainty. Hence, we argue that the root of the tree of life will not be established unless radically new approaches are considered. We propose a hypothetical means to overcome several of the conceptual difficulties pointed out, and suggest that a so-called 'transition analysis' of the structural evolution of the cytoplasmic membrane might be helpful, especially if evolutionary steps involving the rooting issue are polarized accounting more for physicochemical knowledge rather than hypothetical and controversial selective advantages.

Mesh:

Year:  2004        PMID: 14700546     DOI: 10.1016/j.tim.2003.11.002

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  12 in total

Review 1.  The falsifiability of the models for the origin of eukaryotes.

Authors:  Matej Vesteg; Juraj Krajčovič
Journal:  Curr Genet       Date:  2011-10-19       Impact factor: 3.886

2.  Ancient gene duplications and the root(s) of the tree of life.

Authors:  Olga Zhaxybayeva; Pascal Lapierre; J Peter Gogarten
Journal:  Protoplasma       Date:  2005-12-30       Impact factor: 3.356

Review 3.  The origin and evolution of Archaea: a state of the art.

Authors:  Simonetta Gribaldo; Celine Brochier-Armanet
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-06-29       Impact factor: 6.237

4.  Pattern pluralism and the Tree of Life hypothesis.

Authors:  W Ford Doolittle; Eric Bapteste
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-29       Impact factor: 11.205

5.  Rooting the tree of life by transition analyses.

Authors:  Thomas Cavalier-Smith
Journal:  Biol Direct       Date:  2006-07-11       Impact factor: 4.540

Review 6.  The riddle of "life," a biologist's critical view.

Authors:  Heinz Penzlin
Journal:  Naturwissenschaften       Date:  2008-09-02

7.  Origin of eukaryotic cells as a symbiosis of parasitic alpha-proteobacteria in the periplasm of two-membrane-bounded sexual pre-karyotes.

Authors:  Matej Vesteg; Juraj Krajcovic
Journal:  Commun Integr Biol       Date:  2008

8.  A tree of cellular life inferred from a genomic census of molecular functions.

Authors:  Kyung Mo Kim; Arshan Nasir; Kyuin Hwang; Gustavo Caetano-Anollés
Journal:  J Mol Evol       Date:  2014-08-17       Impact factor: 2.395

9.  Evaluating the Evolutionary Origins of Unexpected Character Distributions within the Bacterial Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum.

Authors:  A Budd; D P Devos
Journal:  Front Microbiol       Date:  2012-11-23       Impact factor: 5.640

10.  The two tempos of nuclear pore complex evolution: highly adapting proteins in an ancient frozen structure.

Authors:  Eric Bapteste; Robert L Charlebois; Dave MacLeod; Céline Brochier
Journal:  Genome Biol       Date:  2005-09-30       Impact factor: 13.583

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