Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences.

Literature DB >> 14696388

Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences.

W G Krebs¹, J Tsai, Vadim Alexandrov, Jochen Junker, Ronald Jansen, Mark Gerstein.

Abstract

Mesh：

Substances：
Proteins

Year: 2003 PMID： 14696388 DOI： 10.1016/S0076-6879(03)74023-3

Source DB: PubMed Journal: Methods Enzymol ISSN： 0076-6879 Impact factor: 1.600

Keyword Cloud
Cited

× No keyword cloud information.

9 in total

1. Protein flexibility: coordinate uncertainties and interpretation of structural differences.

Authors: Alexander A Rashin; Abraham H L Rashin; Robert L Jernigan
Journal: Acta Crystallogr D Biol Crystallogr Date: 2009-10-22

2. Factors correlating with significant differences between X-ray structures of myoglobin.

Authors: Alexander A Rashin; Marcin J Domagalski; Michael T Zimmermann; Wladek Minor; Maksymilian Chruszcz; Robert L Jernigan
Journal: Acta Crystallogr D Biol Crystallogr Date: 2014-01-29

3. Diversity of function-related conformational changes in proteins: coordinate uncertainty, fragment rigidity, and stability.

Authors: Alexander A Rashin; Abraham H L Rashin; Robert L Jernigan
Journal: Biochemistry Date: 2010-07-13 Impact factor: 3.162

4. A conformational transition state accompanies tryptophan activation by B. stearothermophilus tryptophanyl-tRNA synthetase.

Authors: Maryna Kapustina; Violetta Weinreb; Li Li; Brian Kuhlman; Charles W Carter
Journal: Structure Date: 2007-10 Impact factor: 5.006

Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences.

1. Protein flexibility: coordinate uncertainties and interpretation of structural differences.

2. Factors correlating with significant differences between X-ray structures of myoglobin.

3. Diversity of function-related conformational changes in proteins: coordinate uncertainty, fragment rigidity, and stability.

4. A conformational transition state accompanies tryptophan activation by B. stearothermophilus tryptophanyl-tRNA synthetase.

5. Assessing local structural perturbations in proteins.

6. The Database of Macromolecular Motions: new features added at the decade mark.

7. Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs.

8. FlexOracle: predicting flexible hinges by identification of stable domains.

9. Hinge Atlas: relating protein sequence to sites of structural flexibility.