Literature DB >> 14696382

Validation of protein structures for protein data bank.

John Westbrook1, Zukang Feng, Kyle Burkhardt, Helen M Berman.   

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Year:  2003        PMID： 14696382     DOI： 10.1016/S0076-6879(03)74017-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  14 in total

1.  MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.

Authors:  Ian W Davis; Laura Weston Murray; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Validation of crystallographic models containing TLS or other descriptions of anisotropy.

Authors:  Frank Zucker; P Christoph Champ; Ethan A Merritt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-09

3.  BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures.

Authors:  Jurgen F Doreleijers; Aart J Nederveen; Wim Vranken; Jundong Lin; Alexandre M J J Bonvin; Robert Kaptein; John L Markley; Eldon L Ulrich
Journal:  J Biomol NMR       Date:  2005-05       Impact factor: 2.835

4.  Deposit3D: a tool for automating structure depositions to the Protein Data Bank.

Authors:  J Badger; J Hendle; S K Burley; C R Kissinger
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-08-31

Review 5.  Data deposition and annotation at the worldwide protein data bank.

Authors:  Shuchismita Dutta; Kyle Burkhardt; Jasmine Young; Ganesh J Swaminathan; Takanori Matsuura; Kim Henrick; Haruki Nakamura; Helen M Berman
Journal:  Mol Biotechnol       Date:  2008-12-10       Impact factor: 2.695

6.  A public database of macromolecular diffraction experiments.

Authors:  Marek Grabowski; Karol M Langner; Marcin Cymborowski; Przemyslaw J Porebski; Piotr Sroka; Heping Zheng; David R Cooper; Matthew D Zimmerman; Marc André Elsliger; Stephen K Burley; Wladek Minor
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-10-28       Impact factor: 7.652

7.  AlgK is a TPR-containing protein and the periplasmic component of a novel exopolysaccharide secretin.

Authors:  Carrie-Lynn Keiski; Michael Harwich; Sumita Jain; Ana Mirela Neculai; Patrick Yip; Howard Robinson; John C Whitney; Laura Riley; Lori L Burrows; Dennis E Ohman; P Lynne Howell
Journal:  Structure       Date:  2010-02-10       Impact factor: 5.006

8.  Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module.

Authors:  Chandrika N Deshpande; Stephen J Harrop; Yan Boucher; Karl A Hassan; Rosa Di Leo; Xiaohui Xu; Hong Cui; Alexei Savchenko; Changsoo Chang; Maurizio Labbate; Ian T Paulsen; H W Stokes; Paul M G Curmi; Bridget C Mabbutt
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240

Review 9.  A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank.

Authors:  Kyle Burkhardt; Bohdan Schneider; Jeramia Ory
Journal:  PLoS Comput Biol       Date:  2006-10-27       Impact factor: 4.475

10.  Ribonuclease A homologues of the zebrafish: polymorphism, crystal structures of two representatives and their evolutionary implications.

Authors:  Konstantina Kazakou; Daniel E Holloway; Stephen H Prior; Vasanta Subramanian; K Ravi Acharya
Journal:  J Mol Biol       Date:  2008-05-04       Impact factor: 5.469
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