Literature DB >> 14694082

Deletion bias in avian introns over evolutionary timescales.

Kevin P Johnson1.   

Abstract

The role that introns play in the function and evolution of nuclear genomes is not fully understood. Recent models of intron evolution suggest that selection and drift may interact to maintain introns in multicellular organisms. In addition, deletion mutations are more likely to become fixed than insertion mutations. Examination of indel substitutions over macroevolutionary timescales in pigeons and doves (Aves: Columbiformes) reveals that deletion substitutions outnumber insertion substitutions by over six times. The length of indel events is variable.

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Year:  2003        PMID: 14694082     DOI: 10.1093/molbev/msh051

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  8 in total

Review 1.  Phylogenetics of modern birds in the era of genomics.

Authors:  Scott V Edwards; W Bryan Jennings; Andrew M Shedlock
Journal:  Proc Biol Sci       Date:  2005-05-22       Impact factor: 5.349

2.  Both size and GC-content of minimal introns are selected in human populations.

Authors:  Dapeng Wang; Jun Yu
Journal:  PLoS One       Date:  2011-03-17       Impact factor: 3.240

3.  The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates.

Authors:  Mikael Brandström; Hans Ellegren
Journal:  Genetics       Date:  2007-05-16       Impact factor: 4.562

4.  The evolution of intron size in amniotes: a role for powered flight?

Authors:  Qu Zhang; Scott V Edwards
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

5.  An Intron of Invertebrate Microphthalmia Transcription Factor Gene Is Evolved from a Longer Ancestral Sequence.

Authors:  Jun-Ming Mao; Yong Wang; Liu Yang; Qin Yao; Ke-Ping Chen
Journal:  Evol Bioinform Online       Date:  2021-01-22       Impact factor: 1.625

6.  Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Authors:  Tamaki Yuri; Rebecca T Kimball; John Harshman; Rauri C K Bowie; Michael J Braun; Jena L Chojnowski; Kin-Lan Han; Shannon J Hackett; Christopher J Huddleston; William S Moore; Sushma Reddy; Frederick H Sheldon; David W Steadman; Christopher C Witt; Edward L Braun
Journal:  Biology (Basel)       Date:  2013-03-13

7.  Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.

Authors:  Claudia C Weber; Bastien Boussau; Jonathan Romiguier; Erich D Jarvis; Hans Ellegren
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

8.  Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon.

Authors:  Anna I Vickrey; Rebecca Bruders; Zev Kronenberg; Emma Mackey; Ryan J Bohlender; Emily T Maclary; Raquel Maynez; Edward J Osborne; Kevin P Johnson; Chad D Huff; Mark Yandell; Michael D Shapiro
Journal:  Elife       Date:  2018-07-17       Impact factor: 8.140

  8 in total

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