Literature DB >> 14693820

HOMGL-comparing genelists across species and with different accession numbers.

Nils Blüthgen1, Szymon M Kiełbasa, Branka Cajavec, Hanspeter Herzel.   

Abstract

UNLABELLED: Homology Gene List (HOMGL) is a web-based tool for comparing gene lists with different accession numbers and identifiers and between different organisms. UniGene, LocusLink, HomoloGene and Ensembl databases are utilized to map between these lists and to retrieve upstream or transcribed sequences for genes in these lists. We illustrate the use of HOMGL with respect to microarray studies and promoter analysis. AVAILABILITY: http://homgl.biologie.hu-berlin.de/

Mesh：

Year:  2004        PMID： 14693820     DOI： 10.1093/bioinformatics/btg379

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  3 in total

1.  Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells.

Authors:  Karsten Jürchott; Ralf-Jürgen Kuban; Till Krech; Nils Blüthgen; Ulrike Stein; Wolfgang Walther; Christian Friese; Szymon M Kiełbasa; Ute Ungethüm; Per Lund; Thomas Knösel; Wolfgang Kemmner; Markus Morkel; Johannes Fritzmann; Peter M Schlag; Walter Birchmeier; Tammo Krueger; Silke Sperling; Christine Sers; Hans-Dieter Royer; Hanspeter Herzel; Reinhold Schäfer
Journal:  PLoS Genet       Date:  2010-12-02       Impact factor: 5.917

2.  Inferring combinatorial regulation of transcription in silico.

Authors:  Nils Blüthgen; Szymon M Kiełbasa; Hanspeter Herzel
Journal:  Nucleic Acids Res       Date:  2005-01-12       Impact factor: 16.971

3.  Storing, linking, and mining microarray databases using SRS.

Authors:  Antoine Veldhoven; Don de Lange; Marcel Smid; Victor de Jager; Jan A Kors; Guido Jenster
Journal:  BMC Bioinformatics       Date:  2005-07-27       Impact factor: 3.169
  3 in total

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