Literature DB >> 14693818

GIS: a biomedical text-mining system for gene information discovery.

Jung-Hsien Chiang1, Hsu-Chun Yu, Huai-Jen Hsu.   

Abstract

UNLABELLED: We present a biomedical text-mining system focused on four types of gene-related information: biological functions, associated diseases, related genes and gene-gene relations. The aim of this system is to provide researchers an easy-to-use bio-information service that will rapidly survey the rapidly burgeoning biomedical literature. AVAILABILITY: http://iir.csie.ncku.edu.tw/~yuhc/gis/

Mesh：

Year:  2004        PMID： 14693818     DOI： 10.1093/bioinformatics/btg369

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

1.  Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.

Authors:  Hong Pan; Li Zuo; Vidhu Choudhary; Zhuo Zhang; Shoi Houi Leow; Fui Teen Chong; Yingliang Huang; Victor Wui Siong Ong; Bijayalaxmi Mohanty; Sin Lam Tan; S P T Krishnan; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Quantitative assessment of dictionary-based protein named entity tagging.

Authors:  Hongfang Liu; Zhang-Zhi Hu; Manabu Torii; Cathy Wu; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2006-06-23       Impact factor: 4.497

3.  The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies.

Authors:  Gautam K Parai; Clement Jonquet; Rong Xu; Mark A Musen; Nigam H Shah
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

4.  Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists.

Authors:  Vladimir B Bajic; Merlin Veronika; Pardha Sarathi Veladandi; Archana Meka; Mok-Wei Heng; Kanagasabai Rajaraman; Hong Pan; Sanjay Swarup
Journal:  Plant Physiol       Date:  2005-08       Impact factor: 8.340

5.  Using unsupervised patterns to extract gene regulation relationships for network construction.

Authors:  Yi-Tsung Tang; Shuo-Jang Li; Hung-Yu Kao; Shaw-Jenq Tsai; Hei-Chia Wang
Journal:  PLoS One       Date:  2011-05-10       Impact factor: 3.240

6.  CoPub Mapper: mining MEDLINE based on search term co-publication.

Authors:  Blaise T F Alako; Antoine Veldhoven; Sjozef van Baal; Rob Jelier; Stefan Verhoeven; Ton Rullmann; Jan Polman; Guido Jenster
Journal:  BMC Bioinformatics       Date:  2005-03-11       Impact factor: 3.169

7.  GeneLibrarian: an effective gene-information summarization and visualization system.

Authors:  Jung-Hsien Chiang; Jyh-Wei Shin; Heng-Hui Liu; Chong-Liang Chin
Journal:  BMC Bioinformatics       Date:  2006-08-29       Impact factor: 3.169

8.  Disease causality extraction based on lexical semantics and document-clause frequency from biomedical literature.

Authors:  Dong-Gi Lee; Hyunjung Shin
Journal:  BMC Med Inform Decis Mak       Date:  2017-05-18       Impact factor: 2.796

9.  DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases.

Authors:  Magbubah Essack; Adil Salhi; Christophe Van Neste; Arwa Bin Raies; Faroug Tifratene; Mahmut Uludag; Arnaud Hungler; Bozidarka Zaric; Sonja Zafirovic; Takashi Gojobori; Esma Isenovic; Vladan P Bajic
Journal:  Oxid Med Cell Longev       Date:  2020-03-27       Impact factor: 6.543

10.  PathBinder--text empirics and automatic extraction of biomolecular interactions.

Authors:  Lifeng Zhang; Daniel Berleant; Jing Ding; Tuan Cao; Eve Syrkin Wurtele
Journal:  BMC Bioinformatics       Date:  2009-10-08       Impact factor: 3.169
  10 in total

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