Literature DB >> 14686915

Active site residues and mechanism of UDP-glucose dehydrogenase.

Xue Ge1, Lisa C Penney, Ivo van de Rijn, Martin E Tanner.   

Abstract

UDP-glucose dehydrogenase catalyzes the NAD+-dependent twofold oxidation of UDP-glucose to give UDP-glucuronic acid. A sequestered aldehyde intermediate is produced in the first oxidation step and a covalently bound thioester is produced in the second oxidation step. This work demonstrates that the Streptococcus pyogenes enzyme incorporates a single solvent-derived oxygen atom during catalysis and probably does not generate an imine intermediate. The reaction of UDP-[6",6"-di-2H]-d-glucose is not accompanied by a primary kinetic isotope effect, indicating that hydride transfer is not rate determining in this reaction. Studies with a mutant of the key active site nucleophile, Cys260Ala, show that it is capable of both reducing the aldehyde intermediate, and oxidizing the hydrated form of the aldehyde intermediate but is incapable of oxidizing UDP-glucose to UDP-glucuronic acid. In the latter case, a ternary Cys260Ala/aldehyde intermediate/NADH complex is presumably formed, but it does not proceed to product as both release and hydration of the bound aldehyde occur slowly. A washout experiment demonstrates that the NADH in this ternary complex is not exchangeable with external NADH, indicating that dissociation only occurs after the addition of a nucleophile to the aldehyde carbonyl. Studies on Thr118Ala show that the value of kcat is reduced 160-fold by this mutation, and that the reaction of UDP-D-[6",6"-di-2H]-glucose is now accompanied by a primary kinetic isotope effect. This indicates that the barriers for the hydride transfer steps have been selectively increased and supports a mechanism in which an ordered water molecule (H-bonded to Thr118) serves as the catalytic base in these steps.

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Year:  2004        PMID: 14686915     DOI: 10.1046/j.1432-1033.2003.03876.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  16 in total

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3.  Vi antigen biosynthesis in Salmonella typhi: characterization of UDP-N-acetylglucosamine C-6 dehydrogenase (TviB) and UDP-N-acetylglucosaminuronic acid C-4 epimerase (TviC).

Authors:  Hua Zhang; Ying Zhou; Hongbo Bao; Hung-wen Liu
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

4.  Noncovalent Intermediate of Thymidylate Synthase: Fact or Fiction?

Authors:  Svetlana A Kholodar; Amnon Kohen
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5.  Structure of Burkholderia cepacia UDP-glucose dehydrogenase (UGD) BceC and role of Tyr10 in final hydrolysis of UGD thioester intermediate.

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Journal:  Structure       Date:  2005-06       Impact factor: 5.006

7.  Characterization of GDP-mannose dehydrogenase from the brown alga Ectocarpus siliculosus providing the precursor for the alginate polymer.

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Journal:  J Biol Chem       Date:  2011-03-24       Impact factor: 5.157

8.  Structure analysis of the Staphylococcus aureus UDP-N-acetyl-mannosamine dehydrogenase Cap5O involved in capsular polysaccharide biosynthesis.

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9.  Kinetic Analysis and Probing with Substrate Analogues of the Reaction Pathway of the Nitrile Reductase QueF from Escherichia coli.

Authors:  Jihye Jung; Tibor Czabany; Birgit Wilding; Norbert Klempier; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2016-10-17       Impact factor: 5.157

10.  UDP-glucose dehydrogenase activity and optimal downstream cellular function require dynamic reorganization at the dimer-dimer subunit interfaces.

Authors:  Annastasia S Hyde; Ashley M Thelen; Joseph J Barycki; Melanie A Simpson
Journal:  J Biol Chem       Date:  2013-10-21       Impact factor: 5.157

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