Literature DB >> 14684901

Preliminary crystallographic analysis of the NAC domain of ANAC, a member of the plant-specific NAC transcription factor family.

Addie Nina Olsen1, Heidi Asschenfeldt Ernst, Leila Lo Leggio, Eva Johansson, Sine Larsen, Karen Skriver.   

Abstract

The NAC domain (residues 1-168) of ANAC, encoded by the abscisic acid-responsive NAC gene from Arabidopsis thaliana, was recombinantly produced in Escherichia coli and crystallized in hanging drops. Three morphologically different crystal forms were obtained within a relatively narrow range of conditions: 10-15% PEG 4000 and 0.1 M imidazole/malic acid buffer pH 7.0 in the reservoir, 3.2-7.7 mg ml(-1) protein stock and a 1:1 ratio of reservoir to protein solution in the hanging drop. One of the crystal forms, designated crystal form III, was found to be suitable for further X-ray analysis. Form III crystals belong to space group P2(1)2(1)2(1), with unit-cell parameters a = 62.0, b = 75.2, c = 80.8 A at 100 K. The unit-cell volume is consistent with two molecules in the asymmetric unit and a peak in the native Patterson map suggests the presence of a non-crystallographic twofold axis parallel to a crystallographic axis. Size-exclusion chromatography of the NAC domain showed that the dimeric state is also the preferred state in solution and probably represents the biologically active form. Data sets were collected from four potential heavy-atom derivatives of the form III crystals. The derivatized crystals are reasonably isomorphous with the non-derivatized crystals and the four data sets are being evaluated for use in structure determination by multiple isomorphous replacement.

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Year:  2003        PMID: 14684901     DOI: 10.1107/s0907444903022029

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

1.  Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors.

Authors:  Heidi A Ernst; Addie Nina Olsen; Sine Larsen; Leila Lo Leggio
Journal:  EMBO Rep       Date:  2004-03       Impact factor: 8.807

2.  Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress.

Authors:  Shi-Yong Song; Ying Chen; Jie Chen; Xiao-Yan Dai; Wen-Hao Zhang
Journal:  Planta       Date:  2011-03-30       Impact factor: 4.116

3.  DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus.

Authors:  Xiao Wang; James N Culver
Journal:  BMC Plant Biol       Date:  2012-08-31       Impact factor: 4.215

4.  Association of microRNAs with Types of Leaf Curvature in Brassica rapa.

Authors:  Wenqing Ren; Han Wang; Jinjuan Bai; Feijie Wu; Yuke He
Journal:  Front Plant Sci       Date:  2018-02-06       Impact factor: 5.753

5.  A NAC transcription factor and its interaction protein hinder abscisic acid biosynthesis by synergistically repressing NCED5 in Citrus reticulata.

Authors:  Feng Zhu; Tao Luo; Chaoyang Liu; Yang Wang; Li Zheng; Xue Xiao; Mingfei Zhang; Hongbin Yang; Wei Yang; Rangwei Xu; Yunliu Zeng; Junli Ye; Juan Xu; Jianguo Xu; Robert M Larkin; Pengwei Wang; Weiwei Wen; Xiuxin Deng; Alisdair R Fernie; Yunjiang Cheng
Journal:  J Exp Bot       Date:  2020-06-22       Impact factor: 6.992

6.  Molecular Basis for a Cell Fate Switch in Response to Impaired Ribosome Biogenesis in the Arabidopsis Root Epidermis.

Authors:  Wenjia Wang; Kook Hui Ryu; Angela Bruex; Christa Barron; John Schiefelbein
Journal:  Plant Cell       Date:  2020-05-05       Impact factor: 11.277

7.  A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.

Authors:  Søren Lindemose; Michael K Jensen; Jan Van de Velde; Charlotte O'Shea; Ken S Heyndrickx; Christopher T Workman; Klaas Vandepoele; Karen Skriver; Federico De Masi
Journal:  Nucleic Acids Res       Date:  2014-06-09       Impact factor: 16.971

8.  Redox feedback regulation of ANAC089 signaling alters seed germination and stress response.

Authors:  Pablo Albertos; Kiyoshi Tatematsu; Isabel Mateos; Inmaculada Sánchez-Vicente; Alejandro Fernández-Arbaizar; Kazumi Nakabayashi; Eiji Nambara; Marta Godoy; José M Franco; Roberto Solano; Davide Gerna; Thomas Roach; Wolfgang Stöggl; Ilse Kranner; Carlos Perea-Resa; Julio Salinas; Oscar Lorenzo
Journal:  Cell Rep       Date:  2021-06-15       Impact factor: 9.423

  8 in total

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