Literature DB >> 14681441

MaizeGDB, the community database for maize genetics and genomics.

Carolyn J Lawrence1, Qunfeng Dong, Mary L Polacco, Trent E Seigfried, Volker Brendel.   

Abstract

The Maize Genetics and Genomics Database (MaizeGDB) is a central repository for maize sequence, stock, phenotype, genotypic and karyotypic variation, and chromosomal mapping data. In addition, MaizeGDB provides contact information for over 2400 maize cooperative researchers, facilitating interactions between members of the rapidly expanding maize community. MaizeGDB represents the synthesis of all data available previously from ZmDB and from MaizeDB-databases that have been superseded by MaizeGDB. MaizeGDB provides web-based tools for ordering maize stocks from several organizations including the Maize Genetics Cooperation Stock Center and the North Central Regional Plant Introduction Station (NCRPIS). Sequence searches yield records displayed with embedded links to facilitate ordering cloned sequences from various groups including the Maize Gene Discovery Project and the Clemson University Genomics Institute. An intuitive web interface is implemented to facilitate navigation between related data, and analytical tools are embedded within data displays. Web-based curation tools for both designated experts and general researchers are currently under development. MaizeGDB can be accessed at http://www.maizegdb.org/.

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Year:  2004        PMID: 14681441      PMCID: PMC308746          DOI: 10.1093/nar/gkh011

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

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Authors:  Qunfeng Dong; Shannon D Schlueter; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

Authors:  Shannon D Schlueter; Qunfeng Dong; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  The Genetic Demonstration of Double Strand Crossing-Over in Zea Mays.

Authors:  M M Rhoades
Journal:  Proc Natl Acad Sci U S A       Date:  1932-07       Impact factor: 11.205

4.  A Correlation of Cytological and Genetical Crossing-Over in Zea Mays.

Authors:  H B Creighton; B McClintock
Journal:  Proc Natl Acad Sci U S A       Date:  1931-08       Impact factor: 11.205

5.  Genetic Effects of X-Rays in Maize.

Authors:  L J Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  1928-01       Impact factor: 11.205

6.  MUTATIONS IN BARLEY INDUCED BY X-RAYS AND RADIUM.

Authors:  L J Stadler
Journal:  Science       Date:  1928-08-24       Impact factor: 47.728

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Journal:  Plant Physiol       Date:  2002-12       Impact factor: 8.340

Review 8.  Progress in maize gene discovery: a project update.

Authors:  China F Lunde; Darren J Morrow; Laura M Roy; Virginia Walbot
Journal:  Funct Integr Genomics       Date:  2002-10-01       Impact factor: 3.410

9.  ZmDB, an integrated database for maize genome research.

Authors:  Qunfeng Dong; Laura Roy; Michael Freeling; Virginia Walbot; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  Database resources of the National Center for Biotechnology.

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Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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  68 in total

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2.  PlantGDB, plant genome database and analysis tools.

Authors:  Qunfeng Dong; Shannon D Schlueter; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  New insights into the genetics of in vivo induction of maternal haploids, the backbone of doubled haploid technology in maize.

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7.  A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes.

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8.  Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies.

Authors:  J Forment; J Gadea; L Huerta; L Abizanda; J Agusti; S Alamar; E Alos; F Andres; R Arribas; J P Beltran; A Berbel; M A Blazquez; J Brumos; L A Canas; M Cercos; J M Colmenero-Flores; A Conesa; B Estables; M Gandia; J L Garcia-Martinez; J Gimeno; A Gisbert; G Gomez; L Gonzalez-Candelas; A Granell; J Guerri; M T Lafuente; F Madueno; J F Marcos; M C Marques; F Martinez; M A Martinez-Godoy; S Miralles; P Moreno; L Navarro; V Pallas; M A Perez-Amador; J Perez-Valle; C Pons; I Rodrigo; P L Rodriguez; C Royo; R Serrano; G Soler; F Tadeo; M Talon; J Terol; M Trenor; L Vaello; O Vicente; Ch Vidal; L Zacarias; V Conejero
Journal:  Plant Mol Biol       Date:  2005-02       Impact factor: 4.076

9.  Plant protein annotation in the UniProt Knowledgebase.

Authors:  Michel Schneider; Amos Bairoch; Cathy H Wu; Rolf Apweiler
Journal:  Plant Physiol       Date:  2005-05       Impact factor: 8.340

10.  Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes.

Authors:  Lorinda K Anderson; Ann Lai; Stephen M Stack; Carene Rizzon; Brandon S Gaut
Journal:  Genome Res       Date:  2005-12-07       Impact factor: 9.043

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