Literature DB >> 14681430

TcruziDB: an integrated Trypanosoma cruzi genome resource.

Michael Luchtan1, Chetna Warade, D Brent Weatherly, Wim M Degrave, Rick L Tarleton, Jessica C Kissinger.   

Abstract

TcruziDB (http://TcruziDB.org) is an integrated genome database for the parasitic organism Trypanosoma cruzi, the causative agent of Chagas' disease. The database currently incorporates all available sequence data (Genomic, BAC, EST) in a single user-friendly location. The database contains a variety of tools specifically designed for searching unannotated draft sequence via BLAST, keyword searches of pre-computed BLAST results, and protein motif searches. Release 1.0 of the database contains nearly 730 million bp of genome sequence from 1.1 million sequence reads generated by the TIGR-Karolinska-SBRI Trypanosoma cruzi Genome Consortium and 15 million bp of clustered EST and genomic sequence obtained from other sources. As annotation, microarray and proteomic data become available, the database will incorporate and integrate these data using the GUS (http://www.gusdb. org) relational framework.

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Mesh:

Year:  2004        PMID: 14681430      PMCID: PMC308783          DOI: 10.1093/nar/gkh049

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

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3.  PROSITE: a documented database using patterns and profiles as motif descriptors.

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Journal:  Brief Bioinform       Date:  2002-09       Impact factor: 11.622

4.  TcruziDB, an integrated database, and the WWW information server for the Trypanosoma cruzi genome project.

Authors:  W Degrave; A B de Miranda; A Amorim; A Brandão; M Aslett; M Vandeyar
Journal:  Mem Inst Oswaldo Cruz       Date:  1997 Nov-Dec       Impact factor: 2.743

5.  MView: a web-compatible database search or multiple alignment viewer.

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Journal:  Mol Biochem Parasitol       Date:  1995-05       Impact factor: 1.759

7.  A random sequencing approach for the analysis of the Trypanosoma cruzi genome: general structure, large gene and repetitive DNA families, and gene discovery.

Authors:  F Agüero; R E Verdún; A C Frasch; D O Sánchez
Journal:  Genome Res       Date:  2000-12       Impact factor: 9.043

8.  PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.

Authors:  Amit Bahl; Brian Brunk; Jonathan Crabtree; Martin J Fraunholz; Bindu Gajria; Gregory R Grant; Hagai Ginsburg; Dinesh Gupta; Jessica C Kissinger; Philip Labo; Li Li; Matthew D Mailman; Arthur J Milgram; David S Pearson; David S Roos; Jonathan Schug; Christian J Stoeckert; Patricia Whetzel
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

  8 in total
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Journal:  Korean J Parasitol       Date:  2009-05-26       Impact factor: 1.341

2.  Trypanosoma cruzi posttranscriptionally up-regulates and exploits cellular FLIP for inhibition of death-inducing signal.

Authors:  Muneaki Hashimoto; Junko Nakajima-Shimada; Takashi Aoki
Journal:  Mol Biol Cell       Date:  2005-05-25       Impact factor: 4.138

3.  TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi.

Authors:  Fernán Agüero; Wenlong Zheng; D Brent Weatherly; Pablo Mendes; Jessica C Kissinger
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

  3 in total

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