Literature DB >> 14681349

The Molecular Biology Database Collection: 2004 update.

Michael Y Galperin1.   

Abstract

The Molecular Biology Database Collection is a public resource listing key databases of value to the biologist, including those featured in this issue of Nucleic Acids Research, and other high-quality databases. All databases included in this Collection are freely available to the public. This listing aims to serve as a convenient starting point for searching the web for reliable information on various aspects of molecular biology, biochemistry and genetics. This year's update includes 548 databases, 162 more than the previous one. The databases are organized in a hierarchical classification that should simplify finding the right database for each given task. Each database in the list comes with a recently updated brief description. The database list and the database descriptions can be accessed online at the Nucleic Acids Research web site http://nar. oupjournals.org/.

Mesh:

Year:  2004        PMID: 14681349      PMCID: PMC308877          DOI: 10.1093/nar/gkh143

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information.

Authors:  M C Costanzo; M E Crawford; J E Hirschman; J E Kranz; P Olsen; L S Robertson; M S Skrzypek; B R Braun; K L Hopkins; P Kondu; C Lengieza; J E Lew-Smith; M Tillberg; J I Garrels
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The Molecular Biology Database Collection: 2003 update.

Authors:  Andreas D Baxevanis
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  The Human Genome Project: lessons from large-scale biology.

Authors:  Francis S Collins; Michael Morgan; Aristides Patrinos
Journal:  Science       Date:  2003-04-11       Impact factor: 47.728

4.  Dealing with database explosion: a cautionary note.

Authors:  U Bhatia; K Robison; W Gilbert
Journal:  Science       Date:  1997-06-13       Impact factor: 47.728

5.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Authors:  R D Fleischmann; M D Adams; O White; R A Clayton; E F Kirkness; A R Kerlavage; C J Bult; J F Tomb; B A Dougherty; J M Merrick
Journal:  Science       Date:  1995-07-28       Impact factor: 47.728

6.  Current status of the Asthma and Allergy Database.

Authors:  T Immervoll; M Wjst
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

  6 in total
  17 in total

1.  Evaluating the near-term infant for early onset sepsis: progress and challenges to consider with 16S rDNA polymerase chain reaction testing.

Authors:  Jeanne A Jordan; Mary Beth Durso; Allyson R Butchko; Judith G Jones; Beverly S Brozanski
Journal:  J Mol Diagn       Date:  2006-07       Impact factor: 5.568

2.  Transcriptomic response to differentiation induction.

Authors:  G W Patton; R Stephens; I A Sidorov; X Xiao; R A Lempicki; D S Dimitrov; R H Shoemaker; G Tudor
Journal:  BMC Bioinformatics       Date:  2006-02-17       Impact factor: 3.169

3.  The interactive online SKY/M-FISH & CGH database and the Entrez cancer chromosomes search database: linkage of chromosomal aberrations with the genome sequence.

Authors:  Turid Knutsen; Vasuki Gobu; Rodger Knaus; Hesed Padilla-Nash; Meena Augustus; Robert L Strausberg; Ilan R Kirsch; Karl Sirotkin; Thomas Ried
Journal:  Genes Chromosomes Cancer       Date:  2005-09       Impact factor: 5.006

4.  Use of pyrosequencing of 16S rRNA fragments to differentiate between bacteria responsible for neonatal sepsis.

Authors:  Jeanne A Jordan; Allyson R Butchko; Mary Beth Durso
Journal:  J Mol Diagn       Date:  2005-02       Impact factor: 5.568

5.  BioWarehouse: a bioinformatics database warehouse toolkit.

Authors:  Thomas J Lee; Yannick Pouliot; Valerie Wagner; Priyanka Gupta; David W J Stringer-Calvert; Jessica D Tenenbaum; Peter D Karp
Journal:  BMC Bioinformatics       Date:  2006-03-23       Impact factor: 3.169

6.  IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences.

Authors:  Véronique Giudicelli; Patrice Duroux; Chantal Ginestoux; Géraldine Folch; Joumana Jabado-Michaloud; Denys Chaume; Marie-Paule Lefranc
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  Thesaurus-based disambiguation of gene symbols.

Authors:  Bob J A Schijvenaars; Barend Mons; Marc Weeber; Martijn J Schuemie; Erik M van Mulligen; Hester M Wain; Jan A Kors
Journal:  BMC Bioinformatics       Date:  2005-06-16       Impact factor: 3.169

8.  The Molecular Biology Database Collection: 2007 update.

Authors:  Michael Y Galperin
Journal:  Nucleic Acids Res       Date:  2006-12-05       Impact factor: 16.971

9.  ProCKSI: a decision support system for Protein (structure) Comparison, Knowledge, Similarity and Information.

Authors:  Daniel Barthel; Jonathan D Hirst; Jacek Błazewicz; Edmund K Burke; Natalio Krasnogor
Journal:  BMC Bioinformatics       Date:  2007-10-26       Impact factor: 3.169

10.  Phylogenetic signal and functional categories in Proteobacteria genomes.

Authors:  Iñaki Comas; Andrés Moya; Fernando González-Candelas
Journal:  BMC Evol Biol       Date:  2007-02-08       Impact factor: 3.260

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