| Literature DB >> 14670088 |
Yvonne Myal1, Marc R Del Bigio, Roy H Rhodes.
Abstract
BACKGROUND: Recent reports indicate that anaplastic oligodendrogliomas frequently show allelic losses on chromosome arms 1p and 19q, and that these deletions are associated with better chemotherapeutic response and overall patient survival. Because of the diversified genetic makeup of the population and the centralized provincial referral system for brain tumor patients in Manitoba, the epidemiological features of such tumors sometimes differ from the published data acquired from non-community based settings. In this study, we assessed the prevalence of allelic deletions for chromosome arms 1p and 19q in anaplastic and in low-grade oligodendrogliomas in the Manitoba population.Entities:
Year: 2003 PMID: 14670088 PMCID: PMC317335 DOI: 10.1186/1472-6890-3-6
Source DB: PubMed Journal: BMC Clin Pathol ISSN: 1472-6890
Histological subtypes of selected gliomas
| Total number of patients | WHO Grade | |
| 31 | ||
| Oligodendroglioma, anaplastic | 14 | 3 |
| Oligodendroglioma | 17 | 2 |
| 21 | 4 | |
| 11 | ||
| Oligoastrocytoma, anaplastic | 6 | 3 |
| Oligoastrocytoma | 3 | 2 |
| Dysembryoplastic neuroepithelial tumor (DNT) | 1 | 1 |
| Astrocytoma, anaplastic | 1 | 3 |
Summary of LOH data in 63 gliomas.
| Deletion detected | ||||||||
| Group | Age | Sex | Chromosome 1 | Chromosome 19 | Histological Diagnosis: | WHO Grade | ||
| D1S508 | D1S2734 | D19S219 | D19S412 | |||||
| 1 | 53 | F | 1 deletion | non-informative | 0 deletion | non-informative | oligodendroglioma, anaplastic | 3 |
| 34 | F | 1 deletion | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma, anaplastic | 3 | |
| 28 | F | non-informative | 0 deletion | 0 deletion | 0 deletion | oligodendroglioma, anaplastic | 3 | |
| 27 | M | 0 deletion | non-informative | 1 deletion | 1 deletion | oligodendroglioma, anaplastic | 3 | |
| * | 16 | M | 0 deletion | 0 deletion | 0 deletion | non-informative | oligodendroglioma, anaplastic | 3 |
| 48 | M | non-informative | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma, anaplastic | 3 | |
| 45 | M | 0 deletion | 0 deletion | 1 deletion | 1 deletion | oligodendroglioma, anaplastic | 3 | |
| 41 | M | non-informative | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma, anaplastic | 3 | |
| 30 | M | non-informative | 1 deletion | 1 deletion | non-informative | oligodendroglioma, anaplastic | 3 | |
| 57 | F | non-informative | non-informative | 1 deletion | 1 deletion | oligodendroglioma | 2 | |
| 56 | M | 1 deletion | 1 deletion | 1 deletion | non-informative | oligodendroglioma | 2 | |
| 54 | F | 1 deletion | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma | 2 | |
| 53 | F | 1 deletion | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma | 2 | |
| 52 | M | 1 deletion | 1 deletion | non-informative | 1 deletion | oligodendroglioma | 2 | |
| 49 | M | 1 deletion | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma | 2 | |
| 43 | F | 1 deletion | 1 deletion | 1 deletion | non-informative | oligodendroglioma | 2 | |
| 38 | F | non-informative | 0 deletion | non-informative | 0 deletion | oligodendroglioma | 2 | |
| 37 | M | 1 deletion | 1 deletion | non-informative | 1 deletion | oligodendroglioma | 2 | |
| 37 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligodendroglioma | 2 | |
| 35 | M | 1 deletion | 1 deletion | 1 deletion | 1 deletion | oligodendroglioma | 2 | |
| 32 | M | non-informative | non-informative | 0 deletion | non-informative | oligodendroglioma | 2 | |
| 28 | M | non-informative | 0 deletion | non-informative | 0 deletion | oligodendroglioma | 2 | |
| 25 | M | 1 deletion | non-informative | 1 deletion | 1 deletion | oligodendroglioma | 2 | |
| * | 17 | M | 0 deletion | 0 deletion | non-informative | 0 deletion | oligodendroglioma | 2 |
| * | 2 | F | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligodendroglioma | 2 |
| #,+ | 41 | F | 1 deletion | 0 deletion | 1 deletion | 0 deletion | oligoastrocytoma, anaplastic | 3 |
| 54 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligoastrocytoma, anaplastic | 3 | |
| 37 | F | 0 deletion | 0 deletion | 1 deletion | 1 deletion | oligoastrocytoma, anaplastic | 3 | |
| 34 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligoastrocytoma, anaplastic | 3 | |
| 48 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligoastrocytoma | 2 | |
| 48 | F | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligoastrocytoma | 2 | |
| 26 | M | 1 deletion | non-informative | 1 deletion | 1 deletion | oligoastrocytoma | 2 | |
| 59 | F | 1 deletion | non-informative | 0 deletion | 0 deletion | glioblastoma multiforme | 4 | |
| 58 | F | 0 deletion | 0 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 57 | F | non-informative | 0 deletion | 0 deletion | non-informative | glioblastoma multiforme | 4 | |
| 53 | M | 0 deletion | 0 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 46 | F | 0 deletion | 0 deletion | 0 deletion | 0 deletion | glioblastoma multiforme | 4 | |
| 31 | F | 1 deletion | 1 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 29 | M | 0 deletion | 0 deletion | 0 deletion | non-informative | glioblastoma multiforme | 4 | |
| * | 8 | M | 1 deletion | 1 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 |
| * | 2 | M | non-informative | 0 deletion | 0 deletion | non-informative | glioblastoma multiforme | 4 |
| 2 | 62 | M | 0 deletion | 0 deletion | non-informative | 1 deletion | oligodendroglioma, anaplastic | 3 |
| 70 | M | non-informative | 0 deletion | 0 deletion | non-informative | oligodendroglioma, anaplastic | 3 | |
| 71 | F | non-informative | 0 deletion | 0 deletion | non-informative | oligodendroglioma, anaplastic | 3 | |
| 66 | M | non-informative | 0 deletion | 0 deletion | non-informative | oligodendroglioma, anaplastic | 3 | |
| 74 | F | non-informative | non-informative | 0 deletion | 0 deletion | oligodendroglioma, anaplastic | 3 | |
| 62 | M | 0 deletion | 0 deletion | 0 deletion | non-informative | oligodendroglioma | 2 | |
| 61 | M | 0 deletion | 0 deletion | non-informative | 0 deletion | oligoastrocytoma, anaplastic | 3 | |
| 78 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | oligoastrocytoma, anaplastic | 3 | |
| 60 | M | non-informative | 0 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 61 | M | 0 deletion | 0 deletion | non-informative | 0 deletion | glioblastoma multiforme | 4 | |
| 64 | M | 0 deletion | non-informative | 0 deletion | 0 deletion | glioblastoma multiforme | 4 | |
| 64 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | glioblastoma multiforme | 4 | |
| # | 65 | F | 1 deletion | 0 deletion | 1 deletion | non-informative | glioblastoma multiforme | 4 |
| 66 | M | 1 deletion | 1 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 66 | M | non-informative | 0 deletion | non-informative | 0 deletion | glioblastoma multiforme | 4 | |
| 70 | M | 0 deletion | 0 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 74 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | glioblastoma multiforme | 4 | |
| 74 | M | non-informative | 0 deletion | non-informative | non-informative | glioblastoma multiforme | 4 | |
| 75 | M | 0 deletion | 0 deletion | 1 deletion | 1 deletion | glioblastoma multiforme | 4 | |
| 76 | M | 1 deletion | non-informative | 0 deletion | 0 deletion | glioblastoma multiforme | 4 | |
| 70 | M | 0 deletion | 0 deletion | 0 deletion | 0 deletion | dysembryoplastic neuroepithial tumor | 1 | |
| 73 | F | 0 deletion | 0 deletion | 0 deletion | 0 deletion | astrocytoma, anaplastic | 3 | |
* pediatric patients. # partial deletions on chromosome 1. + anaplastic with post radiation changes. Homozygous: Both parental alleles in the patient's normal constitutional DNA are identical and migrated as 1 apparent band on a polyacrylamide gel. Homozygous alleles were considered non-informative and not used in the analysis. 0 deletion: The parental alleles migrated as 2 separate bands (heterozygous alleles) and no LOH was detected in the tumor DNA. 1 deletion: The tumor DNA demonstrated a LOH at that locus.
Figure 1Representative deletion mapping: LOH at 4 loci, D1S508, D1S2734, D19S219 and D19S412, in tumors from four different patients (panels A, B, C, D). Comparison between the patient's constitutional DNA (N) and tumor DNA (T) reveals in panel A, a loss of allele 1 in the tumor DNA; in panel B, loss of allele 1; in panel C, loss of allele 2 and in panel D, loss of allele 2. A faint band was sometimes observed in lanes with tumor DNA, most likely reflecting some minimal contamination with normal DNA. M = molecular weight marker; 1 = allele 1; 2 = allele 2.
Figure 2Anaplastic oligodendrogliomas had significantly fewer deletions in younger adults (18–59 yr) than in older adults (60 yr and over).
Primers
| D1S508 | 5'AGCTGGGGAATATATGTNTCATAT3' | 5'TGTGGAAGGCCAACTC3' |
| D1S2734 | 5'GGTTCAAGGGATTCTCCTG3' | 5'TGGCACTCAGACCTCAA3' |
| D19S219 | 5'GTGAGCCAAGATTGTGCC3' | 5'GACTATTTCTGAGACAGATTCCCA3' |
| D19S412 | 5'TGAGCGACAGAATGAGACT3' | 5'ACATCTTACTGAATGCTTGC3' |