Literature DB >> 14668243

Machaon CVE: cluster validation for gene expression data.

Nadia Bolshakova1, Francisco Azuaje.   

Abstract

UNLABELLED: This paper presents a cluster validation tool for gene expression data. Machaon CVE (Clustering and Validation Environment) system aims to partition samples or genes into groups characterized by similar expression patterns, and to evaluate the quality of the clusters obtained. AVAILABILITY: The program is freely available for non-profit use on request at http://www.cs.tcd.ie/Nadia.Bolshakova/Machaon.html SUPPLEMENTARY INFORMATION: http://www.cs.tcd.ie/Nadia.Bolshakova/Machaon.html

Mesh：

Year:  2003        PMID： 14668243     DOI： 10.1093/bioinformatics/btg356

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis.

Authors:  Sachin Mathur; Mahesh Visvanathan; Stan Svojanovsky; Byunggil Yoo; Adagarla B Srinivas; Gerald H Lushington; Peter G Smith
Journal:  Open Bioinforma J       Date:  2009-01-01

2.  Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12.

Authors:  Jingjun Sun; Kagan Tuncay; Alaa Abi Haidar; Lisa Ensman; Frank Stanley; Michael Trelinski; Peter Ortoleva
Journal:  Algorithms Mol Biol       Date:  2007-03-30       Impact factor: 1.405

3.  Metric for measuring the effectiveness of clustering of DNA microarray expression.

Authors:  Raja Loganantharaj; Satish Cheepala; John Clifford
Journal:  BMC Bioinformatics       Date:  2006-09-06       Impact factor: 3.169

Review 4.  HCsnip: An R Package for Semi-supervised Snipping of the Hierarchical Clustering Tree.

Authors:  Askar Obulkasim; Mark A van de Wiel
Journal:  Cancer Inform       Date:  2015-03-22

5.  Detection of molecular signatures of oral squamous cell carcinoma and normal epithelium - application of a novel methodology for unsupervised segmentation of imaging mass spectrometry data.

Authors:  Piotr Widlak; Grzegorz Mrukwa; Magdalena Kalinowska; Monika Pietrowska; Mykola Chekan; Janusz Wierzgon; Marta Gawin; Grzegorz Drazek; Joanna Polanska
Journal:  Proteomics       Date:  2016-04-13       Impact factor: 3.984

6.  Towards validating the hypothesis of phylogenetic profiling.

Authors:  Raja Loganantharaj; Mazen Atwi
Journal:  BMC Bioinformatics       Date:  2007-11-01       Impact factor: 3.169
  6 in total

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