Literature DB >> 14667343

A supertree of early tetrapods.

Marcello Ruta1, Jonathan E Jeffery, Michael I Coates.   

Abstract

A genus-level supertree for early tetrapods is built using a matrix representation of 50 source trees. The analysis of all combined trees delivers a long-stemmed topology in which most taxonomic groups are assigned to the tetrapod stem. A second analysis, which excludes source trees superseded by more comprehensive studies, supports a deep phylogenetic split between lissamphibian and amniote total groups. Instances of spurious groups are rare in both analyses. The results of the pruned second analysis are mostly comparable with those of a recent, character-based and large-scale phylogeny of Palaeozoic tetrapods. Outstanding areas of disagreement include the branching sequence of lepospondyls and the content of the amniote crown group, in particular the placement of diadectomorphs as stem diapsids. Supertrees are unsurpassed in their ability to summarize relationship patterns from multiple independent topologies. Therefore, they might be used as a simple test of the degree of corroboration of nodes in the contributory analyses. However, we urge caution in using them as a replacement for character-based cladograms and for inferring macroevolutionary patterns.

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Year:  2003        PMID: 14667343      PMCID: PMC1691537          DOI: 10.1098/rspb.2003.2524

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  15 in total

Review 1.  Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia).

Authors:  O R Bininda-Emonds; J L Gittleman; A Purvis
Journal:  Biol Rev Camb Philos Soc       Date:  1999-05

2.  Early tetrapod evolution.

Authors: 
Journal:  Trends Ecol Evol       Date:  2000-08       Impact factor: 17.712

3.  Tetrapod phylogeny, amphibian origins, and the definition of the name tetrapoda.

Authors:  Michel Laurin
Journal:  Syst Biol       Date:  2002-04       Impact factor: 15.683

4.  A genus-level supertree of the Dinosauria.

Authors:  Davide Pisani; Adam M Yates; Max C Langer; Michael J Benton
Journal:  Proc Biol Sci       Date:  2002-05-07       Impact factor: 5.349

5.  Matrix representation with parsimony, taxonomic congruence, and total evidence.

Authors:  Davide Pisani; Mark Wilkinson
Journal:  Syst Biol       Date:  2002-02       Impact factor: 15.683

6.  Changing the landscape: a new strategy for estimating large phylogenies.

Authors:  D L Quicke; J Taylor; A Purvis
Journal:  Syst Biol       Date:  2001-02       Impact factor: 15.683

7.  Analyzing evolutionary patterns in amniote embryonic development.

Authors:  Jonathan E Jeffery; Olaf R P Bininda-Emonds; Michael I Coates; Michael K Richardson
Journal:  Evol Dev       Date:  2002 Jul-Aug       Impact factor: 1.930

8.  Properties of matrix representation with parsimony analyses.

Authors:  O R Bininda-Emonds; H N Bryant
Journal:  Syst Biol       Date:  1998-09       Impact factor: 15.683

9.  Analyzing developmental sequences within a phylogenetic framework.

Authors:  Jonathan E Jeffery; Michael K Richardson; Michael I Coates; Olaf R P Bininda-Emonds
Journal:  Syst Biol       Date:  2002-06       Impact factor: 15.683

10.  Use of well-known names in phylogenetic nomenclature: a reply to Laurin.

Authors:  Jason S Anderson
Journal:  Syst Biol       Date:  2002-10       Impact factor: 15.683

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  11 in total

1.  Long bone histology of the stem salamander Kokartus honorarius (Amphibia: Caudata) from the Middle Jurassic of Kyrgyzstan.

Authors:  Pavel Skutschas; Koen Stein
Journal:  J Anat       Date:  2015-02-12       Impact factor: 2.610

2.  New material of the 'microsaur' Llistrofus from the cave deposits of Richards Spur, Oklahoma and the paleoecology of the Hapsidopareiidae.

Authors:  Bryan M Gee; Joseph J Bevitt; Ulf Garbe; Robert R Reisz
Journal:  PeerJ       Date:  2019-01-25       Impact factor: 2.984

3.  Skeletal Morphogenesis of Microbrachis and Hyloplesion (Tetrapoda: Lepospondyli), and Implications for the Developmental Patterns of Extinct, Early Tetrapods.

Authors:  Jennifer C Olori
Journal:  PLoS One       Date:  2015-06-17       Impact factor: 3.240

4.  Feeding biomechanics in Acanthostega and across the fish-tetrapod transition.

Authors:  James M Neenan; Marcello Ruta; Jennifer A Clack; Emily J Rayfield
Journal:  Proc Biol Sci       Date:  2014-02-26       Impact factor: 5.349

5.  A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis.

Authors:  David A Fitzpatrick; Mary E Logue; Jason E Stajich; Geraldine Butler
Journal:  BMC Evol Biol       Date:  2006-11-22       Impact factor: 3.260

6.  The first record of albanerpetontid amphibians (Amphibia: Albanerpetontidae) from East Asia.

Authors:  Ryoko Matsumoto; Susan E Evans
Journal:  PLoS One       Date:  2018-01-03       Impact factor: 3.240

7.  Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches.

Authors:  Stephen A Smith; Jeremy M Beaulieu; Michael J Donoghue
Journal:  BMC Evol Biol       Date:  2009-02-11       Impact factor: 3.260

8.  Rampant tooth loss across 200 million years of frog evolution.

Authors:  Daniel J Paluh; Karina Riddell; Catherine M Early; Maggie M Hantak; Gregory Fm Jongsma; Rachel M Keeffe; Fernanda Magalhães Silva; Stuart V Nielsen; María Camila Vallejo-Pareja; Edward L Stanley; David C Blackburn
Journal:  Elife       Date:  2021-06-01       Impact factor: 8.140

9.  Reweaving the tapestry: a supertree of birds.

Authors:  Katie E Davis; Roderic D M Page
Journal:  PLoS Curr       Date:  2014-06-09

10.  Cranial Morphology of the Carboniferous-Permian Tetrapod Brachydectes newberryi (Lepospondyli, Lysorophia): New Data from µCT.

Authors:  Jason D Pardo; Jason S Anderson
Journal:  PLoS One       Date:  2016-08-26       Impact factor: 3.240

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