Literature DB >> 14664613

On the origin of residual dipolar couplings from denatured proteins.

Martti Louhivuori1, Kimmo Pääkkönen, Kai Fredriksson, Perttu Permi, Juhani Lounila, Arto Annila.   

Abstract

Effects of steric obstruction on random flight chains are examined. Spatial probability distributions are elaborated to calculate residual dipolar couplings and residual chemical shift anisotropy, parameters that are acquired by NMR spectroscopy from solutes dissolved in dilute liquid crystals. Calculations yield chain length and residue position-dependent values in good agreement with simulations to provide understanding of recently acquired data from denatured proteins.

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Year:  2003        PMID: 14664613     DOI: 10.1021/ja035427v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  27 in total

1.  Alignment of chain-like molecules.

Authors:  Martti Louhivuori; Kai Fredriksson; Kimmo Pääkkönen; Perttu Permi; Arto Annila
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

2.  Reassessing random-coil statistics in unfolded proteins.

Authors:  Nicholas C Fitzkee; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

Review 3.  The use of residual dipolar coupling in studying proteins by NMR.

Authors:  Kang Chen; Nico Tjandra
Journal:  Top Curr Chem       Date:  2012

4.  A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.

Authors:  Pau Bernadó; Laurence Blanchard; Peter Timmins; Dominique Marion; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-11       Impact factor: 11.205

5.  Building native protein conformation from highly approximate backbone torsion angles.

Authors:  Haipeng Gong; Patrick J Fleming; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-26       Impact factor: 11.205

6.  Estimating the accuracy of protein structures using residual dipolar couplings.

Authors:  Katya Simon; Jun Xu; Chinpal Kim; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

7.  Statistical coil model of the unfolded state: resolving the reconciliation problem.

Authors:  Abhishek K Jha; Andrés Colubri; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-30       Impact factor: 11.205

8.  Sequence-specific solvent accessibilities of protein residues in unfolded protein ensembles.

Authors:  Pau Bernadó; Martin Blackledge; Javier Sancho
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

9.  Theoretical framework for NMR residual dipolar couplings in unfolded proteins.

Authors:  O I Obolensky; Kai Schlepckow; Harald Schwalbe; A V Solov'yov
Journal:  J Biomol NMR       Date:  2007-07-07       Impact factor: 2.835

10.  p15PAF is an intrinsically disordered protein with nonrandom structural preferences at sites of interaction with other proteins.

Authors:  Alfredo De Biasio; Alain Ibáñez de Opakua; Tiago N Cordeiro; Maider Villate; Nekane Merino; Nathalie Sibille; Moreno Lelli; Tammo Diercks; Pau Bernadó; Francisco J Blanco
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

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