Literature DB >> 14657116

Idiomarina loihiensis sp. nov., a halophilic gamma-Proteobacterium from the Lō'ihi submarine volcano, Hawai'i.

Stuart P Donachie1, Shaobin Hou, Todd S Gregory, Alexander Malahoff, Maqsudul Alam.   

Abstract

During an investigation of bacterial diversity at hydrothermal vents on the Lō'ihi Seamount, Hawai'i, a novel bacterium (designated L2-TR(T)) was cultivated, which shares 99.9 % 16S rRNA gene sequence similarity over 1415 nt with an uncultured eubacterium from sediment at a depth of 11 000 m in the Mariana Trench. The nearest cultivated neighbour of L2-TR(T), however, is Idiomarina abyssalis KMM 227(T), with which it shares 98.9 % 16S rRNA sequence similarity. L2-TR(T) differed from I. abyssalis KMM 227(T) in several phenotypic respects, including growth at 46 degrees C and in medium that contained 20 % (w/v) NaCl. DNA-DNA hybridization data showed that L2-TR(T) did not belong to the species I. abyssalis (43.4 % DNA-DNA reassociation). Cells of L2-TR(T) were Gram-negative rods, 0.35 microm wide and 0.7-1.0 microm long, which were occasionally up to 1.8 microm in length. Cells were motile by a single polar or subpolar flagellum. The major fatty acid in L2-TR(T) was iso-C(15 : 0) (32.6 %). The DNA G+C content was 47.4 mol%. Phenotypic and genotypic analyses indicated that L2-TR(T) could be assigned to the genus Idiomarina but, based on significant phenotypic and genotypic differences, constituted a novel species within this genus, Idiomarina loihiensis sp. nov., of which L2-TR(T) (=ATCC BAA-735(T)=DSM 15497(T)) is the type strain.

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Year:  2003        PMID: 14657116     DOI: 10.1099/ijs.0.02701-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  19 in total

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2.  The Hawaiian Archipelago: a microbial diversity hotspot.

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5.  Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.

Authors:  Shaobin Hou; Jimmy H Saw; Kit Shan Lee; Tracey A Freitas; Claude Belisle; Yutaka Kawarabayasi; Stuart P Donachie; Alla Pikina; Michael Y Galperin; Eugene V Koonin; Kira S Makarova; Marina V Omelchenko; Alexander Sorokin; Yuri I Wolf; Qing X Li; Young Soo Keum; Sonia Campbell; Judith Denery; Shin-Ichi Aizawa; Satoshi Shibata; Alexander Malahoff; Maqsudul Alam
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