Literature DB >> 14653713

Lipid/protein interactions and the membrane/water interfacial region.

Carmen Domene1, Peter J Bond, Sundeep S Deol, Mark S P Sansom.   

Abstract

Despite the importance of lipid/protein interactions in the folding, assembly, stability, and function of membrane proteins, information at an atomic level on how such proteins interact with the lipids that surround them remains sparse. The dynamics and flexible nature of the protein/bilayer interaction make it difficult to study, for example, by crystallographic means. However, based on recent progress in molecular simulations of membranes it is possible to address this problem computationally. This communication reports one of the first attempts to use multiple ns molecular simulations to establish a qualitative picture of the intermolecular interactions between the lipids of a bilayer and two topologically different membrane proteins for which a high resolution (2 A or better) X-ray structure is available.

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Year:  2003        PMID: 14653713     DOI: 10.1021/ja0364874

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  Filter flexibility and distortion in a bacterial inward rectifier K+ channel: simulation studies of KirBac1.1.

Authors:  Carmen Domene; Alessandro Grottesi; Mark S P Sansom
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

2.  Role of aromatic localization in the gating process of a potassium channel.

Authors:  Carmen Domene; Satyavani Vemparala; Michael L Klein; Catherine Vénien-Bryan; Declan A Doyle
Journal:  Biophys J       Date:  2005-09-16       Impact factor: 4.033

3.  Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques.

Authors:  Martin B Ulmschneider; Mark S P Sansom; Alfredo Di Nola
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

4.  Activity of synthetic ion channels is influenced by cation-pi interactions with phospholipid headgroups.

Authors:  Michelle E Weber; Elizabeth K Elliott; George W Gokel
Journal:  Org Biomol Chem       Date:  2005-11-30       Impact factor: 3.876

5.  Identification of novel cholesterol-binding regions in Kir2 channels.

Authors:  Avia Rosenhouse-Dantsker; Sergei Noskov; Serdar Durdagi; Diomedes E Logothetis; Irena Levitan
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

6.  Structural features and lipid binding domain of tubulin on biomimetic mitochondrial membranes.

Authors:  David P Hoogerheide; Sergei Y Noskov; Daniel Jacobs; Lucie Bergdoll; Vitalii Silin; David L Worcester; Jeff Abramson; Hirsh Nanda; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-18       Impact factor: 11.205

7.  Anionic phospholipid interactions with the potassium channel KcsA: simulation studies.

Authors:  Sundeep S Deol; Carmen Domene; Peter J Bond; Mark S P Sansom
Journal:  Biophys J       Date:  2005-11-04       Impact factor: 4.033

8.  Homology modeling and molecular dynamics simulations of transmembrane domain structure of human neuronal nicotinic acetylcholine receptor.

Authors:  Alexander C Saladino; Yan Xu; Pei Tang
Journal:  Biophys J       Date:  2004-12-01       Impact factor: 4.033

9.  Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: lessons from the transmembrane protein OmpA.

Authors:  Katheryn M Sanchez; Jonathan E Gable; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

10.  Lipid-protein interactions of integral membrane proteins: a comparative simulation study.

Authors:  Sundeep S Deol; Peter J Bond; Carmen Domene; Mark S P Sansom
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

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