Literature DB >> 14651863

Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems.

Peter N Golyshin1, Vitor A P Martins Dos Santos, Olaf Kaiser, Manuel Ferrer, Yulia S Sabirova, H Lünsdorf, Tatyana N Chernikova, Olga V Golyshina, Michail M Yakimov, Alfred Pühler, Kenneth N Timmis.   

Abstract

In this paper, we provide background to the genome sequencing project of Alcanivorax borkumensis, which is a marine bacterium that uses exclusively petroleum oil hydrocarbons as sources of carbon and energy (therefore designated "hydrocarbonoclastic"). It is found in low numbers in all oceans of the world and in high numbers in oil-contaminated waters. Its ubiquity and unusual physiology suggest it is globally important in the removal of hydrocarbons from polluted marine systems. A functional genomics analysis of Alcanivorax borkumensis strain SK2 was recently initiated, and its genome sequence has just been completed. Annotation of the genome, metabolome modelling, and functional genomics, will soon reveal important insights into the genomic basis of the properties and physiology of this fascinating and globally important bacterium.

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Year:  2003        PMID: 14651863     DOI: 10.1016/j.jbiotec.2003.07.013

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  16 in total

1.  Diversity and abundance of oil-degrading bacteria and alkane hydroxylase (alkB) genes in the subtropical seawater of Xiamen Island.

Authors:  Wanpeng Wang; Liping Wang; Zongze Shao
Journal:  Microb Ecol       Date:  2010-08-04       Impact factor: 4.552

Review 2.  Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression.

Authors:  Hans Rediers; Paul B Rainey; Jos Vanderleyden; René De Mot
Journal:  Microbiol Mol Biol Rev       Date:  2005-06       Impact factor: 11.056

3.  Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2.

Authors:  Julia S Sabirova; Manuel Ferrer; Heinrich Lünsdorf; Victor Wray; Rainer Kalscheuer; Alexander Steinbüchel; Kenneth N Timmis; Peter N Golyshin
Journal:  J Bacteriol       Date:  2006-09-22       Impact factor: 3.490

4.  Effects of spilled oil on bacterial communities of mediterranean coastal anoxic sediments chronically subjected to oil hydrocarbon contamination.

Authors:  Gilles Miralles; David Nérini; Claude Manté; Monique Acquaviva; Pierre Doumenq; Valérie Michotey; Sylvie Nazaret; Jean Claude Bertrand; Philippe Cuny
Journal:  Microb Ecol       Date:  2007-03-04       Impact factor: 4.552

5.  Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria.

Authors:  Rainer Kalscheuer; Tim Stöveken; Ursula Malkus; Rudolf Reichelt; Peter N Golyshin; Julia S Sabirova; Manuel Ferrer; Kenneth N Timmis; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2006-11-22       Impact factor: 3.490

6.  Substrate specificity and reaction mechanism of purified alkane hydroxylase from the hydrocarbonoclastic bacterium Alcanivorax borkumensis (AbAlkB).

Authors:  Swe-Htet Naing; Saba Parvez; Marilla Pender-Cudlip; John T Groves; Rachel N Austin
Journal:  J Inorg Biochem       Date:  2012-12-30       Impact factor: 4.155

7.  Adaptation of the hydrocarbonoclastic bacterium Alcanivorax borkumensis SK2 to alkanes and toxic organic compounds: a physiological and transcriptomic approach.

Authors:  Daniela J Naether; Slavtscho Slawtschew; Sebastian Stasik; Maria Engel; Martin Olzog; Lukas Y Wick; Kenneth N Timmis; Hermann J Heipieper
Journal:  Appl Environ Microbiol       Date:  2013-05-03       Impact factor: 4.792

8.  Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source.

Authors:  Eleftheria Antoniou; Stilianos Fodelianakis; Emmanouela Korkakaki; Nicolas Kalogerakis
Journal:  Front Microbiol       Date:  2015-04-07       Impact factor: 5.640

Review 9.  The 'LipoYeasts' project: using the oleaginous yeast Yarrowia lipolytica in combination with specific bacterial genes for the bioconversion of lipids, fats and oils into high-value products.

Authors:  Julia S Sabirova; R Haddouche; I N Van Bogaert; F Mulaa; W Verstraete; K N Timmis; C Schmidt-Dannert; J M Nicaud; W Soetaert
Journal:  Microb Biotechnol       Date:  2011-01       Impact factor: 5.813

10.  Hydrocarbon-degrading bacteria: the oil-spill clean-up crew.

Authors:  Rob J W Brooijmans; Margreet I Pastink; Roland J Siezen
Journal:  Microb Biotechnol       Date:  2009-11       Impact factor: 5.813

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