Literature DB >> 14651606

Restricting restriction.

Thomas A Bickle1.   

Abstract

Systems biology is a new, fashionable and well-funded discipline, which to quote from a recent review aims to 'examine the structure and dynamics of cellular and organismal function, rather than the characteristics of isolated parts of a cell or organism em leader ' (Kitano, H. (2002) Science 295:1662-1664). Systems biology will do this by profiting from the vast amounts of biological information that are available in the genomics era and make extensive use of computer modelling. But: 'many breakthroughs in experimental devices, advanced software and analytical methods are required before the achievements of system biology can live up to their much-touted potential'. This edition of Molecular Microbiology contains a paper that is the product of traditional experimental biology but which could serve as a test case for systems biology. The paper shows how bacteria integrate such disparate subsystems as DNA restriction, homologous recombination and regulated proteolysis to protect their chromosomes from degradation. When systems biology can predict this level of choreography, it will be a mature discipline.

Mesh:

Substances:

Year:  2004        PMID: 14651606     DOI: 10.1046/j.1365-2958.2003.03846.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  11 in total

1.  Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria.

Authors:  Kommireddy Vasu; Easa Nagamalleswari; Valakunja Nagaraja
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

2.  Bacteriophage P1 in retrospect and in prospect.

Authors:  Michael B Yarmolinsky
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

Review 3.  Diverse functions of restriction-modification systems in addition to cellular defense.

Authors:  Kommireddy Vasu; Valakunja Nagaraja
Journal:  Microbiol Mol Biol Rev       Date:  2013-03       Impact factor: 11.056

4.  Deletion of one nucleotide within the homonucleotide tract present in the hsdS gene alters the DNA sequence specificity of type I restriction-modification system NgoAV.

Authors:  Monika Adamczyk-Poplawska; Michal Lower; Andrzej Piekarowicz
Journal:  J Bacteriol       Date:  2011-10-07       Impact factor: 3.490

5.  A novel DNA methylation motif identified in Bacillus pumilus BA06 and possible roles in the regulation of gene expression.

Authors:  Gang Liu; Yang-Mei Jiang; Yong-Cheng Liu; Lin-Li Han; Hong Feng
Journal:  Appl Microbiol Biotechnol       Date:  2020-02-22       Impact factor: 4.813

6.  Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes.

Authors:  Ivan Rusinov; Anna Ershova; Anna Karyagina; Sergey Spirin; Andrei Alexeevski
Journal:  BMC Genomics       Date:  2015-12-21       Impact factor: 3.969

7.  Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov.

Authors:  Robson Ee; Yan-Lue Lim; Wai-Fong Yin; Wah-Seng See-Too; Richard J Roberts; Kok-Gan Chan
Journal:  Front Microbiol       Date:  2016-08-31       Impact factor: 5.640

8.  Type I restriction endonucleases are true catalytic enzymes.

Authors:  Piero R Bianco; Cuiling Xu; Min Chi
Journal:  Nucleic Acids Res       Date:  2009-03-30       Impact factor: 16.971

9.  The DpnI/DpnII pneumococcal system, defense against foreign attack without compromising genetic exchange.

Authors:  Calum Johnston; Patrice Polard; Jean-Pierre Claverys
Journal:  Mob Genet Elements       Date:  2013-07-08

Review 10.  Plasmid Transfer by Conjugation in Gram-Negative Bacteria: From the Cellular to the Community Level.

Authors:  Chloé Virolle; Kelly Goldlust; Sarah Djermoun; Sarah Bigot; Christian Lesterlin
Journal:  Genes (Basel)       Date:  2020-10-22       Impact factor: 4.096

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