Literature DB >> 14645075

Excessive counterion condensation on immobilized ssDNA in solutions of high ionic strength.

Ulrich Rant1, Kenji Arinaga, Tsuyoshi Fujiwara, Shozo Fujita, Marc Tornow, Naoki Yokoyama, Gerhard Abstreiter.   

Abstract

We present experiments on the bias-induced release of immobilized, single-stranded (ss) 24-mer oligonucleotides from Au-surfaces into electrolyte solutions of varying ionic strength. Desorption is evidenced by fluorescence measurements of dye-labeled ssDNA. Electrostatic interactions between adsorbed ssDNA and the Au-surface are investigated with respect to 1), a variation of the bias potential applied to the Au-electrode; and 2), the screening effect of the electrolyte solution. For the latter, the concentration of monovalent salt in solution is varied from 3 to 1600 mM. We find that the strength of electric interaction is predominantly determined by the effective charge of the ssDNA itself and that the release of DNA mainly occurs before the electrochemical double layer has been established at the electrolyte/Au interface. In agreement with Manning's condensation theory, the measured desorption efficiency (etarel) stays constant over a wide range of salt concentrations; however, as the Debye length is reduced below a value comparable to the axial charge spacing of the DNA, etarel decreases substantially. We assign this effect to excessive counterion condensation on the DNA in solutions of high ionic strength. In addition, the relative translational diffusion coefficient of ssDNA in solution is evaluated for different salt concentrations.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 14645075      PMCID: PMC1303687          DOI: 10.1016/S0006-3495(03)74800-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  8 in total

1.  Investigation of DNA orientation on gold by EC-STM.

Authors:  Zhi-Ling Zhang; Dai-Wen Pang; Rong-Ying Zhang; Jia-Wei Yan; Bing-Wei Mao; Yi-Peng Qi
Journal:  Bioconjug Chem       Date:  2002 Jan-Feb       Impact factor: 4.774

2.  A semiflexible polymer model applied to loop formation in DNA hairpins.

Authors:  S V Kuznetsov; Y Shen; A S Benight; A Ansari
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

3.  Adsorption of polyelectrolytes at an oppositely charged surface

Authors: 
Journal:  Phys Rev Lett       Date:  2000-04-03       Impact factor: 9.161

Review 4.  The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides.

Authors:  G S Manning
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

5.  Quantitative analysis and characterization of DNA immobilized on gold.

Authors:  Dmitri Y Petrovykh; Hiromi Kimura-Suda; Lloyd J Whitman; Michael J Tarlov
Journal:  J Am Chem Soc       Date:  2003-04-30       Impact factor: 15.419

6.  Electric field directed nucleic acid hybridization on microchips.

Authors:  C F Edman; D E Raymond; D J Wu; E Tu; R G Sosnowski; W F Butler; M Nerenberg; M J Heller
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

7.  Electrochemical quantitation of DNA immobilized on gold.

Authors:  A B Steel; T M Herne; M J Tarlov
Journal:  Anal Chem       Date:  1998-11-15       Impact factor: 6.986

8.  Electric potential control of DNA immobilization on gold electrode.

Authors:  Cunwang Ge; Jianhui Liao; Wei Yu; Ning Gu
Journal:  Biosens Bioelectron       Date:  2003-01       Impact factor: 10.618

  8 in total
  6 in total

1.  Diffusion Regulation in the Vitreous Humor.

Authors:  Benjamin Tillmann Käsdorf; Fabienna Arends; Oliver Lieleg
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

2.  Independent control of grafting density and conformation of single-stranded DNA brushes.

Authors:  Aric Opdahl; Dmitri Y Petrovykh; Hiromi Kimura-Suda; Michael J Tarlov; Lloyd J Whitman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

3.  Size selective DNA transport through a nanoporous membrane in a PDMS microfluidic device.

Authors:  Yixiao Sheng; Michael T Bowser
Journal:  Analyst       Date:  2012-01-20       Impact factor: 4.616

4.  DNA adsorption to and elution from silica surfaces: influence of amino acid buffers.

Authors:  Peter E Vandeventer; Jorge Mejia; Ali Nadim; Malkiat S Johal; Angelika Niemz
Journal:  J Phys Chem B       Date:  2013-09-04       Impact factor: 2.991

5.  Gold-Hybridized Zinc Oxide Nanorods as Real-Time Low-Cost NanoBiosensors for Detection of virulent DNA signature of HPV-16 in Cervical Carcinoma.

Authors:  Thevendran Ramesh; Kai Loong Foo; Haarindraprasad R; Annie Jeyachristy Sam; Maheswaran Solayappan
Journal:  Sci Rep       Date:  2019-11-19       Impact factor: 4.379

6.  Reverse Electrochemical Sensing of FLT3-ITD Mutations in Acute Myeloid Leukemia Using Gold Sputtered ZnO-Nanorod Configured DNA Biosensors.

Authors:  Ramesh Thevendran; Kai Loong Foo; Mohd Hazwan Hussin; Emmanuel Jairaj Moses; Marimuthu Citartan; Haarindraprasad Rajintra Prasad; Solayappan Maheswaran
Journal:  Biosensors (Basel)       Date:  2022-03-10
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.