Literature DB >> 14643670

Sub-families of alpha/beta barrel enzymes: a new adenine deaminase family.

Carin Ribard1, Michel Rochet, Bernard Labedan, Bertrand Daignan-Fornier, Pedro Alzari, Claudio Scazzocchio, Nathalie Oestreicher.   

Abstract

No gene coding for an adenine deaminase has been described in eukaryotes. However, physiological and genetical evidence indicates that adenine deaminases are present in the ascomycetes. We have cloned and characterised the genes coding for the adenine deaminases of Aspergillus nidulans, Saccharomyces cerevisiae and Schizosaccharomyces pombe. The A.nidulans gene was expressed in Escherichia coli and the purified enzyme shows adenine but not adenosine deaminase activity. The open reading frames coded by the three genes are very similar and obviously related to the bacterial and eukaryotic adenosine deaminases rather than to the bacterial adenine deaminases. The latter are related to allantoinases, ureases and dihydroorotases. The fungal adenine deaminases and the homologous adenosine deaminases differ in a number of residues, some of these being clearly involved in substrate specificity. Other prokaryotic enzymes in the database, while clearly related to the above, do not fit into either sub-class, and may even have a different specificity. These results imply that adenine deaminases have appeared twice in the course of evolution, from different ancestral enzymes constructed both around the alpha/beta barrel scaffold.

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Year:  2003        PMID: 14643670     DOI: 10.1016/j.jmb.2003.10.005

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  16 in total

1.  Phenotypes of mutations in the 5'-UTR of a limiting transcription factor in Aspergillus nidulans can be accounted for by translational inhibition and leaky scanning.

Authors:  Nathalie Oestreicher; Claudio Scazzocchio
Journal:  Genetics       Date:  2009-02-16       Impact factor: 4.562

2.  m6A RNA Degradation Products Are Catabolized by an Evolutionarily Conserved N6-Methyl-AMP Deaminase in Plant and Mammalian Cells.

Authors:  Mingjia Chen; Mounashree J Urs; Ismael Sánchez-González; Monilola A Olayioye; Marco Herde; Claus-Peter Witte
Journal:  Plant Cell       Date:  2018-06-08       Impact factor: 11.277

3.  Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis.

Authors:  Megan Woolfit; Elzbieta Rozpedowska; Jure Piskur; Kenneth H Wolfe
Journal:  Eukaryot Cell       Date:  2007-02-02

4.  Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.

Authors:  Alissa M Goble; Zhening Zhang; J Michael Sauder; Stephen K Burley; Subramanyam Swaminathan; Frank M Raushel
Journal:  Biochemistry       Date:  2011-07-06       Impact factor: 3.162

5.  Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae.

Authors:  Per O Ljungdahl; Bertrand Daignan-Fornier
Journal:  Genetics       Date:  2012-03       Impact factor: 4.562

6.  Gene silencing of transgenes inserted in the Aspergillus nidulans alcM and/or alcS loci.

Authors:  Xavier Robellet; Nathalie Oestreicher; Audrey Guitton; Christian Vélot
Journal:  Curr Genet       Date:  2010-05-22       Impact factor: 3.886

7.  Structure of Arabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications for N6-methyl-AMP recognition and processing.

Authors:  Baixing Wu; Dong Zhang; Hongbo Nie; Senlin Shen; Yan Li; Sisi Li
Journal:  RNA Biol       Date:  2019-07-18       Impact factor: 4.652

8.  Phenotypic consequences of purine nucleotide imbalance in Saccharomyces cerevisiae.

Authors:  Christelle Saint-Marc; Benoît Pinson; Fanny Coulpier; Laurent Jourdren; Olesia Lisova; Bertrand Daignan-Fornier
Journal:  Genetics       Date:  2009-07-27       Impact factor: 4.562

9.  Phylogenetic analysis reveals a novel protein family closely related to adenosine deaminase.

Authors:  Stephanie A Maier; Julia R Galellis; Heather E McDermid
Journal:  J Mol Evol       Date:  2005-10-20       Impact factor: 3.973

10.  Protein molecular function prediction by Bayesian phylogenomics.

Authors:  Barbara E Engelhardt; Michael I Jordan; Kathryn E Muratore; Steven E Brenner
Journal:  PLoS Comput Biol       Date:  2005-10-07       Impact factor: 4.475

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