Literature DB >> 14641101

Petri Net representations in systems biology.

J W Pinney1, D R Westhead, G A McConkey.   

Abstract

The mathematical structures known as Petri Nets have recently become the focus of much research effort in both the structural and quantitative analysis of all kinds of biological networks. This review provides a very brief summary of these interesting new research directions.

Mesh：

Year:  2003        PMID： 14641101     DOI： 10.1042/bst0311513

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN： 0300-5127            Impact factor:   5.407


  20 in total

1.  Reconstruction of extended Petri nets from time-series data by using logical control functions.

Authors:  Markus Durzinsky; Wolfgang Marwan; Annegret Wagler
Journal:  J Math Biol       Date:  2013-01       Impact factor: 2.259

2.  BioNetSim: a Petri net-based modeling tool for simulations of biochemical processes.

Authors:  Junhui Gao; Li Li; Xiaolin Wu; Dong-Qing Wei
Journal:  Protein Cell       Date:  2012-03-10       Impact factor: 14.870

Review 3.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

4.  Graph-theoretic methods for the analysis of chemical and biochemical networks. II. Oscillations in networks with delays.

Authors:  Maya Mincheva; Marc R Roussel
Journal:  J Math Biol       Date:  2007-05-31       Impact factor: 2.259

5.  Modelling and simulation of signal transductions in an apoptosis pathway by using timed Petri nets.

Authors:  Chen Li; Qi-Wei Ge; Mitsuru Nakata; Hiroshi Matsuno; Satoru Miyano
Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

Review 6.  Integrating physical and genetic maps: from genomes to interaction networks.

Authors:  Andreas Beyer; Sourav Bandyopadhyay; Trey Ideker
Journal:  Nat Rev Genet       Date:  2007-09       Impact factor: 53.242

7.  Network modelling of gene regulation.

Authors:  Joshua W K Ho; Michael A Charleston
Journal:  Biophys Rev       Date:  2010-12-23

8.  Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension.

Authors:  Chen Li; Masao Nagasaki; Kazuko Ueno; Satoru Miyano
Journal:  BMC Syst Biol       Date:  2009-04-27

9.  Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway.

Authors:  Richard J Orton; Michiel E Adriaens; Amelie Gormand; Oliver E Sturm; Walter Kolch; David R Gilbert
Journal:  BMC Syst Biol       Date:  2009-10-05

10.  Computational systems biology in cancer: modeling methods and applications.

Authors:  Wayne Materi; David S Wishart
Journal:  Gene Regul Syst Bio       Date:  2007-09-17
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