Literature DB >> 14641100

A probabilistic model for the extraction of expression levels from oligonucleotide arrays.

M Milo1, A Fazeli, M Niranjan, N D Lawrence.   

Abstract

In this work we present a probabilistic model to estimate summaries of Affymetrix GeneChip probe level data. Comparisons with two different models were made both on a publicly available dataset and on a study performed in our laboratory, showing that our model performs better for consistency of fold change.

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Mesh：

Year:  2003        PMID： 14641100     DOI： 10.1042/bst0311510

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN： 0300-5127            Impact factor:   5.407


  7 in total

1.  Construction and use of gene expression covariation matrix.

Authors:  Jérôme Hennetin; Petri Pehkonen; Michel Bellis
Journal:  BMC Bioinformatics       Date:  2009-07-13       Impact factor: 3.169

2.  Transcriptomic analysis of the heat stress response for a commercial baker's yeast Saccharomyces cerevisiae.

Authors:  Duygu Varol; Vilda Purutçuoğlu; Remziye Yılmaz
Journal:  Genes Genomics       Date:  2017-10-25       Impact factor: 1.839

3.  Determining gene expression on a single pair of microarrays.

Authors:  Robert W Reid; Anthony A Fodor
Journal:  BMC Bioinformatics       Date:  2008-11-21       Impact factor: 3.169

4.  Genomic analysis of the function of the transcription factor gata3 during development of the mammalian inner ear.

Authors:  Marta Milo; Daniela Cacciabue-Rivolta; Adam Kneebone; Hikke Van Doorninck; Claire Johnson; Grace Lawoko-Kerali; Mahesan Niranjan; Marcelo Rivolta; Matthew Holley
Journal:  PLoS One       Date:  2009-09-23       Impact factor: 3.240

5.  A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability.

Authors:  Herman M J Sontrop; Perry D Moerland; René van den Ham; Marcel J T Reinders; Wim F J Verhaegh
Journal:  BMC Bioinformatics       Date:  2009-11-26       Impact factor: 3.169

6.  Genome-wide analyses of gene expression during mouse endochondral ossification.

Authors:  Claudine G James; Lee-Anne Stanton; Hanga Agoston; Veronica Ulici; T Michael Underhill; Frank Beier
Journal:  PLoS One       Date:  2010-01-13       Impact factor: 3.240

7.  Expression profiling of Dexamethasone-treated primary chondrocytes identifies targets of glucocorticoid signalling in endochondral bone development.

Authors:  Claudine G James; Veronica Ulici; Jan Tuckermann; T Michael Underhill; Frank Beier
Journal:  BMC Genomics       Date:  2007-07-01       Impact factor: 3.969
  7 in total

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