Literature DB >> 14636710

Macrokinetic model for methylotrophic Pichia pastoris based on stoichiometric balance.

H T Ren1, J Q Yuan, K-H Bellgardt.   

Abstract

A macrokinetic model for Pichia pastoris expressing recombinant human serum albumin is proposed. The model describes the balances of some key metabolites, ATP and NADH, during glycerol and methanol metabolism. In the glycerol growth phase, the metabolic pathways mainly include phosphorylation, glycolysis, tricarboxylic acid cycle, and respiratory chain. In the methanol growth phase, methanol is oxidized to formaldehyde at first. Then, while a part of formaldehyde is oxidized to formate, the rest is condensed with xylulose-5-monophosphate to form glyceraldehyde-3-phosphate, and further assimilated to form cell constituents. The metabolic pathways following glyceraldehyde-3-phosphate were assumed to be similar to those in the glycerol growth phase. Based on the model, the macrokinetic bioreaction rates such as the specific substrate consumption rate, the specific growth rate, the specific acetyl-CoA formation rate as well as the specific oxygen uptake rate are obtained. The specific substrate consumption rate and the specific growth rate are then coupled into a bioreactor model such that the relationship between substrate feeding rates and the main state variables, i.e., the medium volume, the concentrations of the biomass, the substrate, and the product, is set up. Experimental results demonstrate that the model can describe the cell growth and the protein production with reasonable accuracy.

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Year:  2003        PMID: 14636710     DOI: 10.1016/j.jbiotec.2003.08.003

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  10 in total

1.  A dynamic method based on the specific substrate uptake rate to set up a feeding strategy for Pichia pastoris.

Authors:  Christian Dietzsch; Oliver Spadiut; Christoph Herwig
Journal:  Microb Cell Fact       Date:  2011-03-03       Impact factor: 5.328

2.  Recombinant sterol esterase from Ophiostoma piceae: an improved biocatalyst expressed in Pichia pastoris.

Authors:  Víctor Barba Cedillo; Francisco J Plou; María Jesús Martínez
Journal:  Microb Cell Fact       Date:  2012-06-07       Impact factor: 5.328

3.  Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity.

Authors:  Marta Tortajada; Francisco Llaneras; Jesús Picó
Journal:  BMC Syst Biol       Date:  2010-08-17

4.  Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach.

Authors:  Moritz von Stosch; Joana Peres; Sebastião Feyo de Azevedo; Rui Oliveira
Journal:  BMC Syst Biol       Date:  2010-09-23

5.  A fast approach to determine a fed batch feeding profile for recombinant Pichia pastoris strains.

Authors:  Christian Dietzsch; Oliver Spadiut; Christoph Herwig
Journal:  Microb Cell Fact       Date:  2011-10-27       Impact factor: 5.328

6.  High-level production of recombinant HBcAg virus-like particles in a mathematically modelled P. pastoris GS115 Mut+ bioreactor process under controlled residual methanol concentration.

Authors:  Emils Bolmanis; Oskars Grigs; Andris Kazaks; Vytautas Galvanauskas
Journal:  Bioprocess Biosyst Eng       Date:  2022-08-08       Impact factor: 3.434

7.  Determination of a dynamic feeding strategy for recombinant Pichia pastoris strains.

Authors:  Oliver Spadiut; Christian Dietzsch; Christoph Herwig
Journal:  Methods Mol Biol       Date:  2014

8.  Towards better understanding of an industrial cell factory: investigating the feasibility of real-time metabolic flux analysis in Pichia pastoris.

Authors:  Mariana L Fazenda; Joao M L Dias; Linda M Harvey; Alison Nordon; Ruan Edrada-Ebel; David Littlejohn; Brian McNeil
Journal:  Microb Cell Fact       Date:  2013-05-21       Impact factor: 5.328

9.  A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient.

Authors:  Francisco Llaneras; Jesús Picó
Journal:  BMC Bioinformatics       Date:  2007-10-30       Impact factor: 3.169

10.  Transcriptomic Analysis of Pichia pastoris (Komagataella phaffii) GS115 During Heterologous Protein Production Using a High-Cell-Density Fed-Batch Cultivation Strategy.

Authors:  Chengbo Zhang; Yu Ma; Huabiao Miao; Xianghua Tang; Bo Xu; Qian Wu; Yuelin Mu; Zunxi Huang
Journal:  Front Microbiol       Date:  2020-03-20       Impact factor: 5.640

  10 in total

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