Literature DB >> 14636588

A conserved signal-responsive sequence mediates activation-induced alternative splicing of CD45.

Caryn Rothrock1, Brian Cannon, Brandon Hahm, Kristen W Lynch.   

Abstract

Alternative splicing of nascent transcripts is a widespread mechanism for altering protein expression in response to extracellular stimuli. However, little is known about the sequences that mediate signal-induced alternative splicing, complicating efforts to identify genes whose splicing may be regulated in response to a particular stimuli. Here we define a sequence element that is both the primary determinant of CD45 variable exon exclusion following T cell stimulation by PMA and is sufficient to confer activation-induced skipping of a heterologous exon. Additionally, we show that this regulatory element has homology to sequences in other signal-regulated genes, suggesting that the alternative splicing of large families of genes may be regulated by common signaling pathways.

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Year:  2003        PMID: 14636588     DOI: 10.1016/s1097-2765(03)00434-9

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  47 in total

1.  Protein Kinase C Theta Modulates PCMT1 through hnRNPL to Regulate FOXP3 Stability in Regulatory T Cells.

Authors:  E Ilker Ozay; Sudarvili Shanthalingam; Joe A Torres; Barbara A Osborne; Gregory N Tew; Lisa M Minter
Journal:  Mol Ther       Date:  2020-06-15       Impact factor: 11.454

2.  In vivo selection reveals combinatorial controls that define a critical exon in the spinal muscular atrophy genes.

Authors:  Natalia N Singh; Elliot J Androphy; Ravindra N Singh
Journal:  RNA       Date:  2004-08       Impact factor: 4.942

3.  Alternative splicing networks regulated by signaling in human T cells.

Authors:  Nicole M Martinez; Qun Pan; Brian S Cole; Christopher A Yarosh; Grace A Babcock; Florian Heyd; William Zhu; Sandya Ajith; Benjamin J Blencowe; Kristen W Lynch
Journal:  RNA       Date:  2012-03-27       Impact factor: 4.942

4.  A consensus CaMK IV-responsive RNA sequence mediates regulation of alternative exons in neurons.

Authors:  Jiuyong Xie; Calvin Jan; Peter Stoilov; Jennifer Park; Douglas L Black
Journal:  RNA       Date:  2005-12       Impact factor: 4.942

5.  Loss of exon identity is a common mechanism of human inherited disease.

Authors:  Timothy Sterne-Weiler; Jonathan Howard; Matthew Mort; David N Cooper; Jeremy R Sanford
Journal:  Genome Res       Date:  2011-07-12       Impact factor: 9.043

6.  Use of transcriptional synergy to augment sensitivity of a splicing reporter assay.

Authors:  Noah Levinson; Rochelle Hinman; Ashwini Patil; Corey R J Stephenson; Stefan Werner; Grace H C Woo; Jingbo Xiao; Peter Wipf; Kristen W Lynch
Journal:  RNA       Date:  2006-03-23       Impact factor: 4.942

7.  Combinatorial control of signal-induced exon repression by hnRNP L and PSF.

Authors:  Alexis A Melton; Jason Jackson; Jiarong Wang; Kristen W Lynch
Journal:  Mol Cell Biol       Date:  2007-07-30       Impact factor: 4.272

8.  In silico to in vivo splicing analysis using splicing code models.

Authors:  Matthew R Gazzara; Jorge Vaquero-Garcia; Kristen W Lynch; Yoseph Barash
Journal:  Methods       Date:  2013-12-07       Impact factor: 3.608

9.  Transcriptome-wide RNA interaction profiling reveals physical and functional targets of hnRNP L in human T cells.

Authors:  Ganesh Shankarling; Brian S Cole; Michael J Mallory; Kristen W Lynch
Journal:  Mol Cell Biol       Date:  2013-10-28       Impact factor: 4.272

Review 10.  Splicing regulation: from a parts list of regulatory elements to an integrated splicing code.

Authors:  Zefeng Wang; Christopher B Burge
Journal:  RNA       Date:  2008-03-27       Impact factor: 4.942

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