Literature DB >> 14636159

Comparative analysis of DNA methylation patterns in transgenic Drosophila overexpressing mouse DNA methyltransferases.

Cora Mund1, Tanja Musch, Martin Strödicke, Birte Assmann, En Li, Frank Lyko.   

Abstract

DNA methyltransferases (Dnmts) mediate the epigenetic modification of eukaryotic genomes. Mammalian DNA methylation patterns are established and maintained by co-operative interactions among the Dnmt proteins Dnmt1, Dnmt3a and Dnmt3b. Owing to their simultaneous presence in mammalian cells, the activities of individual Dnmt have not yet been determined. This includes a fourth putative Dnmt, namely Dnmt2, which has failed to reveal any activity in previous assays. We have now established transgenic Drosophila strains that allow for individual overexpression of all known mouse Dnmts. Quantitative analysis of genomic cytosine methylation levels demonstrated a robust Dnmt activity for the de novo methyltransferases Dnmt3a and Dnmt3b. In addition, we also detected a weak but significant activity for Dnmt2. Subsequent methylation tract analysis by genomic bisulphite sequencing revealed that Dnmt3 enzymes preferentially methylated CpG dinucleotides in a processive manner, whereas Dnmt2 methylated isolated cytosine residues in a non-CpG dinucleotide context. Our results allow a direct comparison of the activities of mammalian Dnmts and suggest a significant functional specialization of these enzymes.

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Year:  2004        PMID: 14636159      PMCID: PMC1223998          DOI: 10.1042/BJ20031567

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  36 in total

1.  A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei.

Authors:  H Leonhardt; A W Page; H U Weier; T H Bestor
Journal:  Cell       Date:  1992-11-27       Impact factor: 41.582

2.  A Dnmt2-like protein mediates DNA methylation in Drosophila.

Authors:  Natascha Kunert; Joachim Marhold; Jonas Stanke; Dirk Stach; Frank Lyko
Journal:  Development       Date:  2003-08-27       Impact factor: 6.868

3.  Mammalian (cytosine-5) methyltransferases cause genomic DNA methylation and lethality in Drosophila.

Authors:  F Lyko; B H Ramsahoye; H Kashevsky; M Tudor; M A Mastrangelo; T L Orr-Weaver; R Jaenisch
Journal:  Nat Genet       Date:  1999-11       Impact factor: 38.330

4.  The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.

Authors:  R S Hansen; C Wijmenga; P Luo; A M Stanek; T K Canfield; C M Weemaes; S M Gartler
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

5.  DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development.

Authors:  M Okano; D W Bell; D A Haber; E Li
Journal:  Cell       Date:  1999-10-29       Impact factor: 41.582

6.  The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors.

Authors:  K D Robertson; E Uzvolgyi; G Liang; C Talmadge; J Sumegi; F A Gonzales; P A Jones
Journal:  Nucleic Acids Res       Date:  1999-06-01       Impact factor: 16.971

7.  In vivo binding pattern of a trans-regulator of homoeotic genes in Drosophila melanogaster.

Authors:  B Zink; R Paro
Journal:  Nature       Date:  1989-02-02       Impact factor: 49.962

8.  Targeted mutation of the DNA methyltransferase gene results in embryonic lethality.

Authors:  E Li; T H Bestor; R Jaenisch
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

9.  DNMT1 is required to maintain CpG methylation and aberrant gene silencing in human cancer cells.

Authors:  Marie-France Robert; Steves Morin; Normand Beaulieu; France Gauthier; Ian C Chute; Annie Barsalou; A Robert MacLeod
Journal:  Nat Genet       Date:  2002-12-23       Impact factor: 38.330

10.  Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.

Authors:  A H Brand; N Perrimon
Journal:  Development       Date:  1993-06       Impact factor: 6.868

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  14 in total

1.  Early demethylation of non-CpG, CpC-rich, elements in the myogenin 5'-flanking region: a priming effect on the spreading of active demethylation.

Authors:  Andrea Fuso; Giampiero Ferraguti; Francesco Grandoni; Raffaella Ruggeri; Sigfrido Scarpa; Roberto Strom; Marco Lucarelli
Journal:  Cell Cycle       Date:  2010-10-29       Impact factor: 4.534

2.  Estimation of DNA sequence context-dependent mutation rates using primate genomic sequences.

Authors:  Wei Zhang; Gerard G Bouffard; Susan S Wallace; Jeffrey P Bond
Journal:  J Mol Evol       Date:  2007-08-04       Impact factor: 2.395

3.  Evolution of gene sequence in response to chromosomal location.

Authors:  Carlos Díaz-Castillo; Kent G Golic
Journal:  Genetics       Date:  2007-09       Impact factor: 4.562

Review 4.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

Review 5.  From genetics to epigenetics: new insights into keloid scarring.

Authors:  Yongjing He; Zhenjun Deng; Mansour Alghamdi; Lechun Lu; Mark W Fear; Li He
Journal:  Cell Prolif       Date:  2017-01-05       Impact factor: 6.831

6.  A new nuclear function of the Entamoeba histolytica glycolytic enzyme enolase: the metabolic regulation of cytosine-5 methyltransferase 2 (Dnmt2) activity.

Authors:  Ayala Tovy; Rama Siman Tov; Ricarda Gaentzsch; Mark Helm; Serge Ankri
Journal:  PLoS Pathog       Date:  2010-02-19       Impact factor: 6.823

7.  Genomic DNA Methylation Analyses Reveal the Distinct Profiles in Castor Bean Seeds with Persistent Endosperms.

Authors:  Wei Xu; Tianquan Yang; Xue Dong; De-Zhu Li; Aizhong Liu
Journal:  Plant Physiol       Date:  2016-04-28       Impact factor: 8.340

8.  Sequence-specific modification of mitochondrial DNA using a chimeric zinc finger methylase.

Authors:  Michal Minczuk; Monika A Papworth; Paulina Kolasinska; Michael P Murphy; Aaron Klug
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-14       Impact factor: 11.205

9.  Silencing of retrotransposons in Dictyostelium by DNA methylation and RNAi.

Authors:  Markus Kuhlmann; Branimira E Borisova; Markus Kaller; Pontus Larsson; Dirk Stach; Jianbo Na; Ludwig Eichinger; Frank Lyko; Victor Ambros; Fredrik Söderbom; Christian Hammann; Wolfgang Nellen
Journal:  Nucleic Acids Res       Date:  2005-11-10       Impact factor: 16.971

10.  Inheritance of an epigenetic mark: the CpG DNA methyltransferase 1 is required for de novo establishment of a complex pattern of non-CpG methylation.

Authors:  Valérie Grandjean; Ruken Yaman; François Cuzin; Minoo Rassoulzadegan
Journal:  PLoS One       Date:  2007-11-07       Impact factor: 3.240

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