Literature DB >> 14634994

Development and validation of COMPASS force field parameters for molecules with aliphatic azide chains.

Michael J McQuaid1, Huai Sun, David Rigby.   

Abstract

To establish force-field-based (molecular) modeling capability that will accurately predict condensed-phase thermophysical properties for materials containing aliphatic azide chains, potential parameters for atom types unique to such chains have been developed and added to the COMPASS force field. The development effort identified the need to define four new atom types: one for each of the three azide nitrogen atoms and one for the carbon atom bonded to the azide. Calculations performed with the expanded force field yield (gas-phase) molecular structures and vibrational frequencies for hydrazoic acid, azidomethane, and the anti and gauche forms of azidoethane in good agreement with values determined experimentally and/or through computational quantum mechanics. Liquid densities calculated via molecular dynamics (MD) simulations were also in good agreement with published values for 13 of 15 training set compounds, the exceptions being hydrazoic acid and azidomethane. Of the 13 compounds whose densities are well simulated, nine have experimentally determined heats of vaporization reported in the open literature, and in all of these cases, MD simulated values for this property are in reasonable agreement with the published values. Simulations with the force field also yielded reasonable density estimates for a series of 2-azidoethanamines that have been synthesized and tested for use as hydrazine-alternative fuels. Copyright 2003 Wiley Periodicals, Inc. J Comput Chem 25: 61-71, 2004

Entities:  

Year:  2004        PMID: 14634994     DOI: 10.1002/jcc.10316

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  17 in total

1.  COMPASS II: extended coverage for polymer and drug-like molecule databases.

Authors:  Huai Sun; Zhao Jin; Chunwei Yang; Reinier L C Akkermans; Struan H Robertson; Neil A Spenley; Simon Miller; Stephen M Todd
Journal:  J Mol Model       Date:  2016-01-27       Impact factor: 1.810

2.  Molecular simulation of protein-surface interactions: benefits, problems, solutions, and future directions.

Authors:  Robert A Latour
Journal:  Biointerphases       Date:  2008-09       Impact factor: 2.456

Review 3.  Biomolecular force fields: where have we been, where are we now, where do we need to go and how do we get there?

Authors:  Pnina Dauber-Osguthorpe; A T Hagler
Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

4.  Theoretical insights into the effects of molar ratios on stabilities, mechanical properties, and detonation performance of CL-20/HMX cocrystal explosives by molecular dynamics simulation.

Authors:  Gui-Yun Hang; Wen-Li Yu; Tao Wang; Jin-Tao Wang; Zhen Li
Journal:  J Mol Model       Date:  2017-01-14       Impact factor: 1.810

5.  Theoretical investigations on the structures and properties of CL-20/TNT cocrystal and its defective models by molecular dynamics simulation.

Authors:  Gui-Yun Hang; Wen-Li Yu; Tao Wang; Jin-Tao Wang
Journal:  J Mol Model       Date:  2018-06-09       Impact factor: 1.810

6.  Comparative studies on structures, mechanical properties, sensitivity, stabilities and detonation performance of CL-20/TNT cocrystal and composite explosives by molecular dynamics simulation.

Authors:  Gui-Yun Hang; Wen-Li Yu; Tao Wang; Jin-Tao Wang; Zhen Li
Journal:  J Mol Model       Date:  2017-09-19       Impact factor: 1.810

7.  Molecular dynamics calculation on structures, stabilities, mechanical properties, and energy density of CL-20/FOX-7 cocrystal explosives.

Authors:  Gui-Yun Hang; Wen-Li Yu; Tao Wang; Jin-Tao Wang; Zhen Li
Journal:  J Mol Model       Date:  2017-11-30       Impact factor: 1.810

8.  The effect of cross linking density on the mechanical properties and structure of the epoxy polymers: molecular dynamics simulation.

Authors:  Ali Shokuhfar; Behrouz Arab
Journal:  J Mol Model       Date:  2013-06-22       Impact factor: 1.810

9.  Theoretical investigation of the structures and properties of CL-20/DNB cocrystal and associated PBXs by molecular dynamics simulation.

Authors:  Gui-Yun Hang; Wen-Li Yu; Tao Wang; Zhen Li
Journal:  J Mol Model       Date:  2018-03-19       Impact factor: 1.810

10.  Parameterization of aromatic azido groups: application as photoaffinity probes in molecular dynamics studies.

Authors:  Gilles Pieffet; Pavel A Petukhov
Journal:  J Mol Model       Date:  2009-03-14       Impact factor: 1.810

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