Literature DB >> 14633391

On the impossibility of reconstructing ancestral data and phylogenies.

Elchanan Mossel1.   

Abstract

We prove that it is impossible to reconstruct ancestral data at the root of "deep" phylogenetic trees with high mutation rates. Moreover, we prove that it is impossible to reconstruct the topology of "deep" trees with high mutation rates from a number of characters smaller than a low-degree polynomial in the number of leaves. Our impossibility results hold for all reconstruction methods. The proofs apply tools from information theory and percolation theory.

Mesh:

Year:  2003        PMID: 14633391     DOI: 10.1089/106652703322539015

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  10 in total

1.  A stochastic evolutionary model for protein structure alignment and phylogeny.

Authors:  Christopher J Challis; Scott C Schmidler
Journal:  Mol Biol Evol       Date:  2012-06-21       Impact factor: 16.240

2.  Origins of life: Common ancestry put to the test.

Authors:  Mike Steel; David Penny
Journal:  Nature       Date:  2010-05-13       Impact factor: 49.962

3.  Universal sharing patterns in proteomes and evolution of protein fold architecture and life.

Authors:  Gustavo Caetano-Anollés; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

Review 4.  Statistics and truth in phylogenomics.

Authors:  Sudhir Kumar; Alan J Filipski; Fabia U Battistuzzi; Sergei L Kosakovsky Pond; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2011-08-26       Impact factor: 16.240

5.  Reconstructing large regions of an ancestral mammalian genome in silico.

Authors:  Mathieu Blanchette; Eric D Green; Webb Miller; David Haussler
Journal:  Genome Res       Date:  2004-12       Impact factor: 9.043

6.  Consistency and convergence rate of phylogenetic inference via regularization.

Authors:  Vu Dinh; Lam Si Tung Ho; Marc A Suchard; Frederick A Matsen
Journal:  Ann Stat       Date:  2018-06-27       Impact factor: 4.028

7.  A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes.

Authors:  Miklos Csuros; Igor B Rogozin; Eugene V Koonin
Journal:  PLoS Comput Biol       Date:  2011-09-15       Impact factor: 4.475

8.  The influence of habitat on the evolution of plants: a case study across Saxifragales.

Authors:  Rafael Rubio de Casas; Mark E Mort; Douglas E Soltis
Journal:  Ann Bot       Date:  2016-08-22       Impact factor: 4.357

9.  The deep(er) roots of Eukaryotes and Akaryotes.

Authors:  Ajith Harish; David Morrison
Journal:  F1000Res       Date:  2020-02-13

Review 10.  The universal tree of life: an update.

Authors:  Patrick Forterre
Journal:  Front Microbiol       Date:  2015-07-21       Impact factor: 5.640

  10 in total

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