Literature DB >> 14631823

All-atom simulations of protein folding and unfolding.

Ryan Day1, Valerie Daggett.   

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Year:  2003        PMID： 14631823     DOI： 10.1016/s0065-3233(03)66009-2

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN： 0065-3233


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  19 in total

1.  Insights into Unfolded Proteins from the Intrinsic ϕ/ψ Propensities of the AAXAA Host-Guest Series.

Authors:  Clare-Louise Towse; Jiri Vymetal; Jiri Vondrasek; Valerie Daggett
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

2.  Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains.

Authors:  Adam Liwo; Mey Khalili; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

3.  Molecular dynamics with the united-residue model of polypeptide chains. I. Lagrange equations of motion and tests of numerical stability in the microcanonical mode.

Authors:  Mey Khalili; Adam Liwo; Franciszek Rakowski; Paweł Grochowski; Harold A Scheraga
Journal:  J Phys Chem B       Date:  2005-07-21       Impact factor: 2.991

4.  Molecular dynamics with the United-residue force field: ab initio folding simulations of multichain proteins.

Authors:  Ana V Rojas; Adam Liwo; Harold A Scheraga
Journal:  J Phys Chem B       Date:  2007-01-11       Impact factor: 2.991

5.  Protein folding: then and now.

Authors:  Yiwen Chen; Feng Ding; Huifen Nie; Adrian W Serohijos; Shantanu Sharma; Kyle C Wilcox; Shuangye Yin; Nikolay V Dokholyan
Journal:  Arch Biochem Biophys       Date:  2007-06-08       Impact factor: 4.013

6.  Dynameomics: large-scale assessment of native protein flexibility.

Authors:  Noah C Benson; Valerie Daggett
Journal:  Protein Sci       Date:  2008-09-16       Impact factor: 6.725

7.  ART-RRT: As-Rigid-As-Possible search for protein conformational transition paths.

Authors:  Minh Khoa Nguyen; Léonard Jaillet; Stéphane Redon
Journal:  J Comput Aided Mol Des       Date:  2019-08-21       Impact factor: 3.686

8.  Fine grained sampling of residue characteristics using molecular dynamics simulation.

Authors:  Hyun Joo; Xiaotao Qu; Rosemarie Swanson; C Michael McCallum; Jerry Tsai
Journal:  Comput Biol Chem       Date:  2010-06-19       Impact factor: 2.877

9.  Wavelet Analysis of Protein Motion.

Authors:  Noah C Benson; Valerie Daggett
Journal:  Int J Wavelets Multiresolut Inf Process       Date:  2012-07       Impact factor: 1.408

10.  Principal component analysis for protein folding dynamics.

Authors:  Gia G Maisuradze; Adam Liwo; Harold A Scheraga
Journal:  J Mol Biol       Date:  2008-10-15       Impact factor: 5.469
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