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Literature DB >> 14630668

PreP: gene expression data pre-processing.

Jorge García de la Nava¹, Sacha van Hijum, Oswaldo Trelles.

Abstract

UNLABELLED: PreP is a versatile, powerful, standalone application that aims at pre-processing gene expression data. AVAILABILITY: Documentation and executable file for MS-Windows are available at http://chirimoyo.ac.uma.es/bitlab/services/index.htm

Entities: Gene

Mesh：

Year: 2003 PMID： 14630668 DOI： 10.1093/bioinformatics/btg318

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

18 in total

1. Expression of transcription activator ComK of Bacillus subtilis in the heterologous host Lactococcus lactis leads to a genome-wide repression pattern: a case study of horizontal gene transfer.

Authors: Kim A Susanna; Chris D den Hengst; Leendert W Hamoen; Oscar P Kuipers
Journal: Appl Environ Microbiol Date: 2006-01 Impact factor: 4.792

2. Lactobacillus reuteri 100-23 modulates urea hydrolysis in the murine stomach.

Authors: Charlotte M Wilson; Diane Loach; Blair Lawley; Tracey Bell; Ian M Sims; Paul W O'Toole; Aldert Zomer; Gerald W Tannock
Journal: Appl Environ Microbiol Date: 2014-07-25 Impact factor: 4.792

3. Transcriptome analysis reveals mechanisms by which Lactococcus lactis acquires nisin resistance.

Authors: Naomi E Kramer; Sacha A F T van Hijum; Jan Knol; Jan Kok; Oscar P Kuipers
Journal: Antimicrob Agents Chemother Date: 2006-05 Impact factor: 5.191

4. Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

Authors: Aldert L Zomer; Girbe Buist; Rasmus Larsen; Jan Kok; Oscar P Kuipers
Journal: J Bacteriol Date: 2006-10-06 Impact factor: 3.490

5. Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403.

Authors: Brice Sperandio; Patrice Polard; Dusko S Ehrlich; Pierre Renault; Eric Guédon
Journal: J Bacteriol Date: 2005-06 Impact factor: 3.490

6. Fructose utilization in Lactococcus lactis as a model for low-GC gram-positive bacteria: its regulator, signal, and DNA-binding site.

Authors: Charlotte Barrière; Maria Veiga-da-Cunha; Nicolas Pons; Eric Guédon; Sacha A F T van Hijum; Jan Kok; Oscar P Kuipers; Dusko S Ehrlich; Pierre Renault
Journal: J Bacteriol Date: 2005-06 Impact factor: 3.490

PreP: gene expression data pre-processing.

1. Expression of transcription activator ComK of Bacillus subtilis in the heterologous host Lactococcus lactis leads to a genome-wide repression pattern: a case study of horizontal gene transfer.

2. Lactobacillus reuteri 100-23 modulates urea hydrolysis in the murine stomach.

3. Transcriptome analysis reveals mechanisms by which Lactococcus lactis acquires nisin resistance.

4. Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

5. Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403.

6. Fructose utilization in Lactococcus lactis as a model for low-GC gram-positive bacteria: its regulator, signal, and DNA-binding site.

7. Copper stress affects iron homeostasis by destabilizing iron-sulfur cluster formation in Bacillus subtilis.

8. A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.

9. CodY of Streptococcus pneumoniae: link between nutritional gene regulation and colonization.

10. PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data.