Literature DB >> 14630666

BLAST++: BLASTing queries in batches.

Hao Wang1, Beng Chin Ooi, Kian-Lee Tan, Twee-Hee Ong, Lei Zhou.   

Abstract

UNLABELLED: BLAST++ is a tool that is integrated with NCBI BLAST, allowing multiple, say K, queries to be searched against a database concurrently. The results obtained by BLAST++ are identical to that obtained by executing BLAST on each of the K queries, but BLAST++ completes the processing in a much shorter time. AVAILABILITY: http://xena1.ddns.comp.nus.edu.sg/~genesis/blast++ SUPPLEMENTARY INFORMATION: http://xena1.ddns.comp.nus.edu.sg/~genesis/blast++

Mesh：

Year:  2003        PMID： 14630666     DOI： 10.1093/bioinformatics/btg310

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  TdeA, a TolC-like protein required for toxin and drug export in Aggregatibacter (Actinobacillus) actinomycetemcomitans.

Authors:  Juan A Crosby; Scott C Kachlany
Journal:  Gene       Date:  2006-10-17       Impact factor: 3.688

2.  Insights into Symbiont Population Structure among Three Vestimentiferan Tubeworm Host Species at Eastern Pacific Spreading Centers.

Authors:  Maëva Perez; S Kim Juniper
Journal:  Appl Environ Microbiol       Date:  2016-08-15       Impact factor: 4.792

3.  Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy.

Authors:  Francisco J Roig; Fernando González-Candelas; Eva Sanjuán; Belén Fouz; Edward J Feil; Carlos Llorens; Craig Baker-Austin; James D Oliver; Yael Danin-Poleg; Cynthia J Gibas; Yechezkel Kashi; Paul A Gulig; Shatavia S Morrison; Carmen Amaro
Journal:  Front Microbiol       Date:  2018-01-05       Impact factor: 5.640

4.  Fast batch searching for protein homology based on compression and clustering.

Authors:  Hongwei Ge; Liang Sun; Jinghong Yu
Journal:  BMC Bioinformatics       Date:  2017-11-21       Impact factor: 3.169

5.  The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants.

Authors:  Md Asadulghani; Yoshitoshi Ogura; Tadasuke Ooka; Takehiko Itoh; Akira Sawaguchi; Atsushi Iguchi; Keisuke Nakayama; Tetsuya Hayashi
Journal:  PLoS Pathog       Date:  2009-05-01       Impact factor: 6.823

6.  miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST.

Authors:  You Jung Kim; Andrew Boyd; Brian D Athey; Jignesh M Patel
Journal:  Nucleic Acids Res       Date:  2005-08-01       Impact factor: 16.971

7.  An updated explanation of ancestral karyotype changes and reconstruction of evolutionary trajectories to form Camelina sativa chromosomes.

Authors:  Zhikang Zhang; Fanbo Meng; Pengchuan Sun; Jiaqing Yuan; Ke Gong; Chao Liu; Weijie Wang; Xiyin Wang
Journal:  BMC Genomics       Date:  2020-10-12       Impact factor: 3.969
  7 in total

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